BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0234.0004.p
         (97 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SA1133 [S] COG0011 Uncharacterized conserved protein                  109   1e-24
CAC1398 [S] COG0011 Uncharacterized conserved protein                  72   2e-13
BH3874 [S] COG0011 Uncharacterized conserved protein                   60   1e-09

>SA1133 [S] COG0011 Uncharacterized conserved protein
          Length = 97

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 75/95 (78%)

Query: 1  MANTLLSIQVIPKTPNNEDSIPYVDKAIEVIQQSGVKHQVNPLETTMEGELSELLEVVRH 60
          M +TL+SIQ+IPKTPNN++ IPYVD+AI++I +SG+  +V PLETT++G ++E L +++ 
Sbjct: 1  MKDTLMSIQIIPKTPNNDNVIPYVDEAIKIIDESGLHFRVGPLETTVQGNMNECLILIQS 60

Query: 61 MHEALIASGSPSVISQIKIAHNPSGISMDKLTEKY 95
          ++E ++    PS+ISQ+K  H P GI+++ LTEKY
Sbjct: 61 LNERMVELECPSIISQVKFYHVPDGITIETLTEKY 95


>CAC1398 [S] COG0011 Uncharacterized conserved protein
          Length = 97

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 6  LSIQVIPKTPNNEDSIPYVDKAIEVIQQSGVKHQVNPLETTMEGELSELLEVVRHMHEAL 65
          +S+QV+P     +     VDK IE I+ SGVK+ + P+ETTMEG+L  LLE+V+   E  
Sbjct: 7  VSLQVLP-VVEEKRLYEVVDKVIEYIKASGVKYIIGPMETTMEGDLDTLLEIVKKAQEIC 65

Query: 66 IASGSPSVISQIKIAHNPSGISMDKLTEKYR 96
          +  GS  V S +KI +   G++M++   KY+
Sbjct: 66 VKEGSERVASVVKIDYKAEGVTMNEKVGKYK 96


>BH3874 [S] COG0011 Uncharacterized conserved protein
          Length = 92

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 1  MANTLLSIQVIPKTPNNEDSIPYVDKAIEVIQQSGVKHQVNPLETTMEGELSELLEVVRH 60
          MA   +  QV+P    + D+   + + +EV+++SG+K++V P+ET +EG+L ++  +++ 
Sbjct: 1  MAEVTVGFQVMP-NGKDMDTHGVIPEIVEVVKESGLKYEVGPMETVVEGKLDDVFSLIKQ 59

Query: 61 MHEALIASGSPSVISQIKIAHNPSGISMD 89
            +  I +G+  V++ +KI + P G+S++
Sbjct: 60 AQQVGIDAGASEVMTNVKIHYRPEGVSIE 88


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.310    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,700,976
Number of extensions: 243121
Number of successful extensions: 451
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 3
Length of query: 97
Length of database: 38,378,431
Length adjustment: 66
Effective length of query: 31
Effective length of database: 30,766,387
Effective search space: 953757997
Effective search space used: 953757997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 109 (46.6 bits)