BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0234.0003.p (356 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM0484 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 341 1e-93 CAC1400 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 338 5e-93 mll1755 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 143 3e-34 BH2682 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 115 1e-25 BMEI1737 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate tran... 93 8e-19 >TM0484 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 316 Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 164/296 (55%), Positives = 213/296 (71%), Gaps = 1/296 (0%) Query: 59 KIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADTMVTSGEAAFGISAQE 118 ++ V LDW PNTNHTGLY AK+LG+Y EEGLDV+IVQP A+ +V SG+A FG+S QE Sbjct: 21 EVTVVLDWYPNTNHTGLYVAKDLGFYREEGLDVKIVQPSRLTAEQLVASGKAEFGVSYQE 80 Query: 119 ALTLARLQDVPIVSIAAIIQHNTSGFAAPKDRNIKTPKDFEGKTYGGWGSPAEEAAMKAI 178 A+TL+R + +PIVSIAAIIQHNTSGFA KD IK+ KD+EGK YG WGSP E+A ++ I Sbjct: 81 AVTLSRGEGMPIVSIAAIIQHNTSGFAWLKDEGIKSVKDWEGKRYGSWGSPIEKATIEYI 140 Query: 179 MDPEGGDVKKVKLVNIGEADFFTAVKRDI-DFAWIFYAWTGIEAELRGEPVDMLYLKDYA 237 M G D KV VN+G+ DFF D+ DFAWIFY W G+ ++++G ++ L LKD Sbjct: 141 MRKYGADPSKVIFVNVGQMDFFAGTLNDVFDFAWIFYGWDGVASKVKGIEIEFLPLKDID 200 Query: 238 PQLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVPDLDPKL 297 DYYTPVL TSE + + P+LV+ FL AT KGY+YAI P EAA IL K P+LD K+ Sbjct: 201 EVFDYYTPVLITSESLMKQKPDLVRRFLRATAKGYEYAIQHPVEAAKILLKYAPELDEKI 260 Query: 298 VLASQKWLSPKYKDDAARWGEQKAEVWKNYADWMYGLKLLDKPLDAASAFTNDYLP 353 V+ SQK+L+ +YK DA +WG QK EVW+ YA+W++ + L + +D AFTN++LP Sbjct: 261 VVESQKYLAGQYKADAEKWGYQKEEVWRRYAEWLHSMGFLKEMIDVTKAFTNEFLP 316 >CAC1400 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 333 Score = 338 bits (868), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 160/301 (53%), Positives = 213/301 (70%), Gaps = 2/301 (0%) Query: 56 ELTKIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADTMVTSGEAAFGIS 115 +L K V LDWTPNTNHTG+Y A + GYY EEGLDV+I QP + ++ + + FG+S Sbjct: 33 KLDKTTVILDWTPNTNHTGMYVALDKGYYKEEGLDVKIQQPSSGSVTDLIATNKGDFGVS 92 Query: 116 AQEALTLARLQD--VPIVSIAAIIQHNTSGFAAPKDRNIKTPKDFEGKTYGGWGSPAEEA 173 QE +T A +PI +IAA++QHNTSGFAAPK +NIK+ KD EGK YGGWGSP+EEA Sbjct: 93 YQEDVTYALTGKTPLPIKTIAAVLQHNTSGFAAPKSKNIKSIKDAEGKVYGGWGSPSEEA 152 Query: 174 AMKAIMDPEGGDVKKVKLVNIGEADFFTAVKRDIDFAWIFYAWTGIEAELRGEPVDMLYL 233 +KAIM+ G D K+K+VNIG D+F A K+++DFAWIF WTGIEA+L+G +D + + Sbjct: 153 VIKAIMEKNGADFSKLKIVNIGNDDYFAATKKNVDFAWIFEGWTGIEAKLKGIDLDYVAV 212 Query: 234 KDYAPQLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVPDL 293 KD P LDYYTPV+ T+ K + E+P K F+ AT KGYQYA PEE+A IL K P++ Sbjct: 213 KDLDPALDYYTPVIITNNKILKENPAKAKKFMLATKKGYQYAAKHPEESAKILRKYAPEI 272 Query: 294 DPKLVLASQKWLSPKYKDDAARWGEQKAEVWKNYADWMYGLKLLDKPLDAASAFTNDYLP 353 D KL + SQK+++ Y DD ++WGE K+ VWKNYAD++ L+ K L+ AFTN++L Sbjct: 273 DEKLAVESQKYMATHYADDMSKWGEMKSSVWKNYADFLKSKGLIKKELNVKDAFTNEFLS 332 Query: 354 Q 354 + Sbjct: 333 K 333 >mll1755 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 338 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 138/250 (55%), Gaps = 5/250 (2%) Query: 59 KIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADTMVTSGEAAFGISAQE 118 K+ VALDWT NTNH GL+ A++ G+Y E GL+V+I+ GA T+V + A FGI+ Sbjct: 33 KVTVALDWTVNTNHIGLFVARDKGFYREAGLEVDILPYSDTGAGTLVANRVADFGINGTI 92 Query: 119 ALTLARLQDVPIVSIAAIIQHNTSGFAAPKDRN-IKTPKDFEGKTYGGWGSPAEEAAMKA 177 +L + + ++ A++Q T +R IK+PKD +G TYGG+GS E A + Sbjct: 93 SLFTQKTAGADLKAVYAVVQSETGRVVFNAERGEIKSPKDLDGLTYGGFGSAWENALIST 152 Query: 178 IMDPEGGDVKKVKLVNIGEADFFTAVKRDIDFAWIFYAWTGIEAELRGEPVDMLYLKDYA 237 I+ +GG + V +G + + +DF W G+EAEL+G DY Sbjct: 153 IIRHDGGK-GNFETVTLGTSAYEALANGSVDFTLEVSTWEGVEAELKGIKQRSFVYADYG 211 Query: 238 PQLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVPD--LDP 295 D +T ++++SE + +P L AF+ AT +GYQ+ +D P EAAA+L A D +P Sbjct: 212 VP-DEHTTLISSSEAYLQANPALASAFIQATRRGYQFTVDHPAEAAALLIAANKDALTNP 270 Query: 296 KLVLASQKWL 305 L+ AS K L Sbjct: 271 ALIEASLKAL 280 >BH2682 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 330 Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 153/302 (50%), Gaps = 13/302 (4%) Query: 57 LTKIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADTMVT-SGEAAFGIS 115 L ++V LDW PN HT LY A E GY+AEEGLDV+IV P +T SG +S Sbjct: 30 LETVEVMLDWYPNAVHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLALS 89 Query: 116 AQEALTLARLQDVPIVSIAAIIQHNTSGFAAPKDRNIKTPKDFEGKTYGGWGSPAEEAAM 175 Q + LAR +D+P+VS+A++++ + +++ +P D G T G G P E + Sbjct: 90 YQPDVILARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLTVGYPGIPVNEPIL 149 Query: 176 KAIMDPEGGDVKKVKLVNIG---EADFFTAVKRDIDFAWIFYAWTGIEAELRGEPVDMLY 232 K +++ GGD ++V L+++G A + + +I + + ++ E G + Sbjct: 150 KTMVEAAGGDYEQVHLMDVGFELGASIVSGRADAVVGTYINHEYPVLKHE--GHDISYFN 207 Query: 233 LKDYA-PQLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVP 291 DY P+ D VL ++E + E E++ AF A KGY++ ++ P+EA +L Sbjct: 208 PVDYGVPEYDEL--VLISNEAYVEESGEVLAAFWRAALKGYEWMVENPDEALNVLLTNQD 265 Query: 292 DLDPKLVL----ASQKWLSPKYKDDAARWGEQKAEVWKNYADWMYGLKLLDKPLDAASAF 347 + + L+ S L K ++ +G Q AE W+ W+ L++P+ A AF Sbjct: 266 EANFPLIQEVEEESLSILLEKMENPNGPFGGQDAESWEEVISWLDAHDWLEQPVVAEDAF 325 Query: 348 TN 349 ++ Sbjct: 326 SS 327 >BMEI1737 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 341 Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 21/287 (7%) Query: 59 KIKVALDWTPNTNHTGLYAAKELGYYAEEGLDVEIVQPGAAGADT-MVTSGEAAFGISAQ 117 K+K+ LDW N +H + A +LGY+ + GLDV+IV P A T MV +G+A +S Q Sbjct: 44 KLKLILDWYVNPDHGPIIIANKLGYFRQAGLDVDIVAPADASVPTKMVAAGQADLAVSYQ 103 Query: 118 EALTLARLQDVPIVSIAAIIQHNTSGFAAPKDRNIKTPKDFEGKTYGGWGSPAEEAAMKA 177 + + L + +P++ + +I + D ++ D +GK G + EE + Sbjct: 104 QQVHLQVHEGLPVIRVGTLIDSPLNCLMTRDDGSVNAIADLKGKKIGYSVAGVEETLLGT 163 Query: 178 IMDPEGGDVKKVKLVNIGEADFFTAVKRDIDFAWIFYAWTGIEAE---LRGEPVDMLYLK 234 I+ G + V+L+N+ + + + +D + A+ +E + G +++ Sbjct: 164 ILGQHGVKLSDVELINVNFSLAPALMSKQVD--AVIGAYRNVELNQMAVEGVAGKCFFVE 221 Query: 235 DYA-PQLDYYTPVLTTSEKEIAEHPELVKAFLAATTKGYQYAIDKPEEAAAILSKAVPDL 293 + P D V + + + AE ++ + FLAAT K QY ++ PE++ I S +L Sbjct: 222 EEGVPVYDELVYVANSDKLDAAERQKISR-FLAATEKAAQYIVNHPEKSYEIFSSYSTEL 280 Query: 294 DPKLVLASQKWLSPKYKDDAARWGEQKAEV----WKNYADWM--YGL 334 + L + W KD AR+ A + W Y ++ +GL Sbjct: 281 KDE--LNQRAW-----KDTVARFSRAPASLDHGRWSRYESYLKEHGL 320 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,591,542 Number of extensions: 985843 Number of successful extensions: 2733 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 2708 Number of HSP's successfully gapped: 17 Length of query: 356 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 249 Effective length of database: 26,037,693 Effective search space: 6483385557 Effective search space used: 6483385557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)