BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0232.0021.p
         (87 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ytcD [K] COG1733 Predicted transcriptional regulators              142   1e-34
BH3884 [K] COG1733 Predicted transcriptional regulators               107   5e-24
L133547 [K] COG1733 Predicted transcriptional regulators              101   2e-22
lin0869 [K] COG1733 Predicted transcriptional regulators              100   4e-22
lin1899 [K] COG1733 Predicted transcriptional regulators               94   7e-20

>BS_ytcD [K] COG1733 Predicted transcriptional regulators
          Length = 126

 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 75/85 (88%)

Query: 2   RTSDLKRHMPNITQKMLTQQLRELEQDGIVNRISYNQVPPKVEYELSDYGRTLQSILDSL 61
           RTS+LKR MPNITQKMLTQQLRELE DG++NRI YNQVPPKVEYELS+YGR+L+ ILD L
Sbjct: 35  RTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDML 94

Query: 62  CAWGEQHIIKQYGDKFAVLEDNVLN 86
           CAWG  HI + YGD F+VLE++VLN
Sbjct: 95  CAWGANHINRVYGDTFSVLEESVLN 119


>BH3884 [K] COG1733 Predicted transcriptional regulators
          Length = 128

 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 61/81 (75%)

Query: 2   RTSDLKRHMPNITQKMLTQQLRELEQDGIVNRISYNQVPPKVEYELSDYGRTLQSILDSL 61
           RTS+L+R MP ITQKMLT QLR LE+D I+ R  YN+VPPKVEYEL+ YG  L+  LD L
Sbjct: 42  RTSELRRLMPAITQKMLTTQLRGLEKDEIITRKVYNEVPPKVEYELTPYGWGLKPALDLL 101

Query: 62  CAWGEQHIIKQYGDKFAVLED 82
           C WGE H+ K YGDK  VLE+
Sbjct: 102 CYWGEDHLEKVYGDKSKVLEE 122


>L133547 [K] COG1733 Predicted transcriptional regulators
          Length = 115

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 2/82 (2%)

Query: 2   RTSDLKRHMPNITQKMLTQQLRELEQDGIVNRISYNQVPPKVEYELSDYGRTLQSILDSL 61
           R  +L+R +P I+QKMLTQQLRELE D I+ R  YNQVPPKVEY LS YG TL  +LD L
Sbjct: 34  RPGELRRQIPGISQKMLTQQLRELEIDNIIVRKVYNQVPPKVEYSLSPYGETLNGLLDIL 93

Query: 62  CAWGEQHI--IKQYGDKFAVLE 81
           C+WGE H+  +K  G++  VLE
Sbjct: 94  CSWGEGHVQTLKSMGEEVQVLE 115


>lin0869 [K] COG1733 Predicted transcriptional regulators
          Length = 117

 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 54/68 (79%)

Query: 2   RTSDLKRHMPNITQKMLTQQLRELEQDGIVNRISYNQVPPKVEYELSDYGRTLQSILDSL 61
           RT +LKR +PNITQKMLTQQLRELE+ G++ R  Y Q+PPKVEY LS+YG +L  IL+ L
Sbjct: 34  RTGELKRLIPNITQKMLTQQLRELEKSGVIIRKVYEQIPPKVEYSLSEYGESLSEILNKL 93

Query: 62  CAWGEQHI 69
           C WGE H+
Sbjct: 94  CLWGENHV 101


>lin1899 [K] COG1733 Predicted transcriptional regulators
          Length = 120

 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 57/68 (83%)

Query: 2   RTSDLKRHMPNITQKMLTQQLRELEQDGIVNRISYNQVPPKVEYELSDYGRTLQSILDSL 61
           RT +L+R +P I+QK+L QQLRELE+DGI++R  YN++PPKVEY ++ YG TL +I+D++
Sbjct: 33  RTGELQRCIPKISQKVLVQQLRELERDGIIDRTVYNELPPKVEYSITAYGLTLNAIVDTM 92

Query: 62  CAWGEQHI 69
           C WG+++I
Sbjct: 93  CQWGKENI 100


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,009,332
Number of extensions: 179310
Number of successful extensions: 582
Number of sequences better than 1.0e-05: 58
Number of HSP's gapped: 583
Number of HSP's successfully gapped: 58
Length of query: 87
Length of database: 38,378,431
Length adjustment: 57
Effective length of query: 30
Effective length of database: 31,804,393
Effective search space: 954131790
Effective search space used: 954131790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)