BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0232.0019.p
         (83 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA2013_2 [T] COG0642 Signal transduction histidine kinase              89   2e-18
sll0474_2 [T] COG0642 Signal transduction histidine kinase             77   6e-15
SPAC27E2.09_5 [T] COG0642 Signal transduction histidine kinase         77   7e-15
CC0586_2 [T] COG0642 Signal transduction histidine kinase              77   8e-15
YPO1217_1 [T] COG0642 Signal transduction histidine kinase             75   2e-14

>MA2013_2 [T] COG0642 Signal transduction histidine kinase
          Length = 296

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 57/80 (71%)

Query: 2   LTLEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYA 61
           + L F V+DTGIGIP +K+S +F PF Q  +++ R++GGTGLGL+I   LVELM G I+ 
Sbjct: 182 VALLFKVKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAISSQLVELMEGRIWV 241

Query: 62  KPDAGQGAVFVFTIQVSEGQ 81
           + + G+G  F FT++V  G+
Sbjct: 242 ESEVGKGCTFYFTVRVKRGE 261


>sll0474_2 [T] COG0642 Signal transduction histidine kinase
          Length = 540

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 49/72 (68%)

Query: 4   LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
           L FTV DTGIGI  D+++ +F+PF QI S +NR++ GTGLGLS+ K +VEL GG +    
Sbjct: 458 LSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTS 517

Query: 64  DAGQGAVFVFTI 75
              +G+ F  TI
Sbjct: 518 KLNEGSRFKITI 529


>SPAC27E2.09_5 [T] COG0642 Signal transduction histidine kinase
          Length = 438

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 51/74 (68%)

Query: 4   LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
           L F +EDTGIG+ ++++  LF PFTQ+  +  R +GG+GLGLSIC  + ++M G+I  + 
Sbjct: 171 LRFEIEDTGIGLKEEQLKLLFNPFTQVDGSTTRIYGGSGLGLSICLQICKIMDGDIGVQS 230

Query: 64  DAGQGAVFVFTIQV 77
             G+G+ F F +Q+
Sbjct: 231 VYGEGSTFWFHVQL 244


>CC0586_2 [T] COG0642 Signal transduction histidine kinase
          Length = 232

 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 45/70 (64%)

Query: 4   LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
           LE  V DTGIGI +D +  LF  F+Q+  TI R+FGG+GLGL+I + L E MGGEI    
Sbjct: 163 LEIAVADTGIGIAEDHLERLFGRFSQVDDTIARRFGGSGLGLAIGRFLAEAMGGEIQVSS 222

Query: 64  DAGQGAVFVF 73
             G+G+ F  
Sbjct: 223 TVGRGSTFTL 232


>YPO1217_1 [T] COG0642 Signal transduction histidine kinase
          Length = 726

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 49/78 (62%)

Query: 4   LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
           LEF V DTG+GI   +++ LF PF Q+ + + R F GTGLGL+IC+ LV LM G++    
Sbjct: 627 LEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVIS 686

Query: 64  DAGQGAVFVFTIQVSEGQ 81
           + G G++F   I +   Q
Sbjct: 687 ELGMGSIFAIRIPLYHHQ 704


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,230,816
Number of extensions: 246327
Number of successful extensions: 756
Number of sequences better than 1.0e-05: 96
Number of HSP's gapped: 818
Number of HSP's successfully gapped: 96
Length of query: 83
Length of database: 38,378,431
Length adjustment: 53
Effective length of query: 30
Effective length of database: 32,265,729
Effective search space: 967971870
Effective search space used: 967971870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)