BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0015.p (1026 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2013_3 [T] COG2972 Predicted signal transduction protein with ... 175 5e-43 BS_ywpD_2 [T] COG2972 Predicted signal transduction protein with... 171 5e-42 BH1547_3 [T] COG2972 Predicted signal transduction protein with ... 163 1e-39 VC0622_1 [T] COG0642 Signal transduction histidine kinase 162 2e-39 ypdA [T] COG3275 Putative regulator of cell autolysis 151 5e-36 >BH2013_3 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 216 Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 86/211 (40%), Positives = 135/211 (63%), Gaps = 1/211 (0%) Query: 812 RTLLDMRKSIRTSVQTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQYLR 871 R +++++ SI+ ++ E A+LQAQI+PHFL+N LN I S+ D LL Q+LR Sbjct: 1 RAVIELKHSIQERLRMEAAWLQAQIQPHFLFNTLNTIASLSEIDTKRMAALLEKFGQFLR 60 Query: 872 SSFDFQNRGQTVPIEKELELVRSYLALEKARFDDRLNIVFDLPQDTMALVPPLSIQPIVE 931 SFD QN VPI EL L SY+ +E+ RF +RL + +D + + +PPLSIQP+VE Sbjct: 61 KSFDGQNIHSLVPITHELALTESYVYIEQERFGERLKVHWDKDEHVVCNLPPLSIQPLVE 120 Query: 932 NAVNHGLMQKESGGTVTLSIRQLPGHLVVAVTDDGIGMTQERIADILSDERTE-GGIGLR 990 NA+ HG+++K GG V + I++ + + +TDDG+GM + + ++L+ + + GIG+ Sbjct: 121 NALKHGVLKKPEGGNVHIRIKKQEETVKIMITDDGVGMDKATLNNVLTRKPDQVSGIGML 180 Query: 991 NIQRRLLKMYGAGLSVISMPDQGTTISYTIP 1021 N RL +++G GL V S P +GT+IS+ +P Sbjct: 181 NTDLRLKQLFGKGLFVESQPGKGTSISFYVP 211 >BS_ywpD_2 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 218 Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 131/207 (63%), Gaps = 5/207 (2%) Query: 824 SVQTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQYLRSSFDFQNRGQTV 883 + + E+AFLQ+QIKPHFLYN LN IIS+ D + A E+ + + YLR SFDFQN Sbjct: 4 ATRMEMAFLQSQIKPHFLYNVLNTIISLTHLDIEKAREVTEEFTNYLRMSFDFQNTSAIS 63 Query: 884 PIEKELELVRSYLALEKARFDDRLNIVFDLPQDTMALVPPLSIQPIVENAVNHGLMQKES 943 EL ++ SYL++EK RF +RL ++FD+ +D ++PPL IQP+VENAV HG+ +K Sbjct: 64 SFRHELSIINSYLSIEKTRFSNRLEVLFDIDEDIDFILPPLMIQPLVENAVLHGVSKKRG 123 Query: 944 GGTVTLSI-RQLPGHLVVAVTDDGIGMTQERIADILSDERTEGGIGLRNIQRRLLKMYGA 1002 GG + L+ +Q + V D+G G+T E+ D+LS + + +GL+NI +RL G+ Sbjct: 124 GGWIKLTAKKQSKNEYHIKVEDNGPGITPEKQIDLLSTD-FDRSVGLKNINQRLKHFCGS 182 Query: 1003 GLSVISMPDQGTTISYTI---PRTGTP 1026 L + S PD GT++S I TG+P Sbjct: 183 ELMISSTPDAGTSVSMLIHLAETTGSP 209 >BH1547_3 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 218 Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 132/212 (62%), Gaps = 2/212 (0%) Query: 812 RTLLDMRKSIRTSVQTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQYLR 871 + L + ++SIR ++ E A+LQAQI+PHFL+N LNAI+++ D +LL + +L+ Sbjct: 1 KALTEAKQSIRDQLRMEGAWLQAQIQPHFLFNTLNAILALSEIDIKRMQKLLEVFADFLK 60 Query: 872 SSFDFQNRGQTVPIEKELELVRSYLALEKARFDDRLNIVFDLPQDTMALVPPLSIQPIVE 931 + F F N + PIE EL V+SYL +EK RF RLN+ +++ ++P +IQP+VE Sbjct: 61 NKFTFTNLDELAPIEIELSTVQSYLYIEKERFAQRLNVRWEVEDCKALMIPLFTIQPLVE 120 Query: 932 NAVNHGLMQKESGGTVTLSIRQLPGHLVVAVTDDGIGMTQERIADILSDE-RTEGGIGLR 990 NAV HGL + SGG +T+ I+ ++ V VTD+G+GM + + +L++ GIGLR Sbjct: 121 NAVKHGL-NRSSGGEITIKIKNEDTYVKVTVTDNGVGMDENIVQHLLTERPSARSGIGLR 179 Query: 991 NIQRRLLKMYGAGLSVISMPDQGTTISYTIPR 1022 N RL + YG GL + S GT++S+ + + Sbjct: 180 NTDMRLKRHYGKGLHIESKLGVGTSVSFLVQK 211 >VC0622_1 [T] COG0642 Signal transduction histidine kinase Length = 769 Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 143/251 (56%) Query: 410 TRKYKSSFLEVEQLSRRLVTLDGLKDDFMADTSYELRKPLQGIVNMAQTLAEGASGSLSP 469 ++ +S+ L + + + L + LKD+F+A TS+ELR PL G++ +A+ L GA+G +S Sbjct: 484 NKELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISA 543 Query: 470 QQKGQLSMIVSTGKRLGSLINDMADFAKLNHGDLFLKRQAVDLRMVASSVMEVTSHISAX 529 K QL +I+S+G+RL +L++D+ D+ K+ +G L ++R AVDL V+E++ H+ Sbjct: 544 AHKYQLDIIISSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGK 603 Query: 530 XXXXXXXXXXXXXXXXXXXXXXXSQILFNLLANAVNHTHKGVITLSAKVIEEYVAVIVAD 589 Q+L+NL+ NA+ +T +G I +SA I++ V V V D Sbjct: 604 KTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATYIDDKVRVQVVD 663 Query: 590 TGQGIAPERLGTIFXXXXXXXXXXKKIYHELGLGLSITQKLVELNGGRIEVQSTPGEGSE 649 TGQGI E+L IF + GLGLSI+++L+EL G + V S P G+ Sbjct: 664 TGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTT 723 Query: 650 FTFTLPILKEK 660 F+FTLP+ E+ Sbjct: 724 FSFTLPLASEE 734 >ypdA [T] COG3275 Putative regulator of cell autolysis Length = 565 Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/201 (37%), Positives = 127/201 (63%), Gaps = 2/201 (0%) Query: 826 QTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQYLRSSFDFQNRGQTVPI 885 + E+ LQ++I PHFL+NALNAI S +PD A +L+ +LS+YLR + + ++ Q + I Sbjct: 358 KAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQ-IDI 416 Query: 886 EKELELVRSYLALEKARFDDRLNIVFDLPQDTMALVPPLSIQPIVENAVNHGLMQKESGG 945 +KEL ++ Y+A+E+ARF D+L +++D+ ++ +P L IQP+VENA+ HG+ + G Sbjct: 417 KKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNCCIPSLLIQPLVENAIVHGIQPCKGKG 476 Query: 946 TVTLSIRQLPGHLVVAVTDDGIGMTQERIADILSDERTEGGIGLRNIQRRLLKMYGAGLS 1005 VT+S+ + + +AV D G G+ + I + ++E IGL N+ R+ +YG GL Sbjct: 477 VVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLH 536 Query: 1006 VISMPDQGTTISYTIPRTGTP 1026 + + + GT I++ IP TP Sbjct: 537 IRRL-EPGTEIAFYIPNQRTP 556 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 65,316,624 Number of extensions: 2573219 Number of successful extensions: 6958 Number of sequences better than 1.0e-05: 471 Number of HSP's gapped: 6714 Number of HSP's successfully gapped: 477 Length of query: 1026 Length of database: 38,378,431 Length adjustment: 116 Effective length of query: 910 Effective length of database: 24,999,687 Effective search space: 22749715170 Effective search space used: 22749715170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 121 (51.2 bits)