BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0003.p (416 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SSO12256 [M] COG1215 Glycosyltransferases, probably involved in ... 137 4e-32 L80399 [M] COG1215 Glycosyltransferases, probably involved in ce... 129 8e-30 L98542 [M] COG1215 Glycosyltransferases, probably involved in ce... 122 8e-28 ycdQ [M] COG1215 Glycosyltransferases, probably involved in cell... 119 1e-26 ZycdQ [M] COG1215 Glycosyltransferases, probably involved in cel... 119 1e-26 >SSO12256 [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis Length = 289 Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 11/234 (4%), Positives = 35/234 (14%), Gaps = 5/234 (2%) Query: 53 IMVPAHNEGVVISKTVESLLALDYPHDRYEIIVINDNSSDNSAELLGRIQSRQPERNLI- 111 + ++I L + + + ++ G Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAY--IRARR 58 Query: 112 IINTDAVTGGKGKSNALNIGFTRSRGELIAIYDADNTPERTALRYLVAEIMNDATLGAVI 171 + + + R + +T Y A Sbjct: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALY-RRSPEWSAFGIRPP 117 Query: 172 GKFRTRNRDASLLTRFINIETLSFQWMAQAGRWKLFKLCTIPGTNFIMRRSIVESIGGWD 231 + + + + + + + + Sbjct: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 Query: 232 VKAIAEDTEISFRIYMMGYRIKFQPKSVTWEQEPQTVKVWFKQRTRWAKGNIYV 285 V +T S + + Y Sbjct: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 >L80399 [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis Length = 289 Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 0/259 (0%), Positives = 0/259 (0%), Gaps = 8/259 (3%) Query: 47 EYPFVTIMVPAHNEGVVISKTVESLLALDYPHDRYEIIVINDNSSDNSAELLGRIQSRQP 106 + I + S L A + D+ + + Sbjct: 44 DVTGHAIGAYIRARRLSKSAVALRLTARPILD--IALQYRFDSQQTFTRAFKKQFAQTPA 101 Query: 107 E-RNLIIINTDAVTGGKGKSNALNIGFTRSRGELIAIYDADNTPERTALRYLVAEIMNDA 165 R + + + + + + Sbjct: 102 LYRRSPEWSAFG---IRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHE 158 Query: 166 TLGAVIGKFRTRNRDASLLTRFINIETLS-FQWMAQAGRWKLFKLCTIPGTNFIMRRSIV 224 F + ET + + L +++ V Sbjct: 159 MRYQFWHDFLGNAP-TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPV 217 Query: 225 ESIGGWDVKAIAEDTEISFRIYMMGYRIKFQPKSVTWEQEPQTVKVWFKQRTRWAKGNIY 284 GG V E + +++ P ++ Q ++ ++ A Sbjct: 218 MLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI 277 Query: 285 VIVKNIPLLFDRSAAKIRF 303 Sbjct: 278 296 >L98542 [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis Length = 289 Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 0/279 (0%), Positives = 0/279 (0%), Gaps = 19/279 (6%) Query: 23 VALIIAGYLYYIKTEN-EDVP-EIKGEYPFVTIMVPAHNEGVVISKTVESLLALDYPHDR 80 L + + + I+ Sbjct: 36 WHLQRMFKDVTGHAIGAYIRARRLS---KSAVALRLTARPILDIALQYRFDSQ-QTFTRA 91 Query: 81 YEIIVINDNSSDNSAELLGRIQSRQPERNLIIINTDAVTGGKGKSNALNIGFTRSRGELI 140 ++ + + R P R + + Sbjct: 92 FKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPE-----HKFVTLEDTPLIGVTQSYS 146 Query: 141 AIYDADNTPERTAL-RYLVAEIMNDAT-LGAVIGKFRTRNRDASLLTRFINIETLSFQWM 198 + + ++ + N T + G TR T + Sbjct: 147 CSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPS-QDKDDEQEVFYTTALAQD 205 Query: 199 AQAGRWKLFKLCTI---PGTNFIMRRSIVESIGGWDVKAIAEDTEISFRIYMMGYRIKFQ 255 + + G + + + + + + + + Sbjct: 206 QA--DGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIER 263 Query: 256 PKSVTWEQEPQTVKVWFKQRTRWAKGNIYVIVKNIPLLF 294 Sbjct: 264 302 >ycdQ [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis Length = 289 Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 0/260 (0%), Positives = 0/260 (0%), Gaps = 9/260 (3%) Query: 37 ENEDVPEIKGEYPFVTIMVPAHNEGVVISKTVESLLALDYPHDRYEIIVINDNSSDNSAE 96 + + + + R Sbjct: 64 VALRLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPAL--YRRSPEWSAFGIRPPLRL 120 Query: 97 LLGRIQSRQPERNLIIINTDAVTGGKGKSNALNIGFTRSRGELIAIYDADNTPERTALRY 156 + + +S + ++ + + Sbjct: 121 GEFTMPEHKFVTLEDTPLIG-----VTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 Query: 157 LVAEIMNDATLGAVIGKFRTRNRDASLLTRFINIETLSFQWMAQAGRWKLFKLCTIPGTN 216 V +N+ + + L + + + Sbjct: 176 PVLYGLNETRPSQDKDDEQEVFY-TTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 Query: 217 FIMRRSIVESIGGWDVKAIAEDTEISFRIYMMGYRIKFQPKSVTWEQEPQTVKVWFKQRT 276 Sbjct: 235 294 Query: 277 RWAKGNIYVIVKNIPLLFDR 296 Sbjct: 295 314 >ZycdQ [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis Length = 289 Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 0/260 (0%), Positives = 0/260 (0%), Gaps = 9/260 (3%) Query: 37 ENEDVPEIKGEYPFVTIMVPAHNEGVVISKTVESLLALDYPHDRYEIIVINDNSSDNSAE 96 + + + + R Sbjct: 64 VALRLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPAL--YRRSPEWSAFGIRPPLRL 120 Query: 97 LLGRIQSRQPERNLIIINTDAVTGGKGKSNALNIGFTRSRGELIAIYDADNTPERTALRY 156 + + +S + ++ + + Sbjct: 121 GEFTMPEHKFVTLEDTPLIG-----VTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 Query: 157 LVAEIMNDATLGAVIGKFRTRNRDASLLTRFINIETLSFQWMAQAGRWKLFKLCTIPGTN 216 V +N+ + + L + + + Sbjct: 176 PVLYGLNETRPSQDKDDEQEVFY-TTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 Query: 217 FIMRRSIVESIGGWDVKAIAEDTEISFRIYMMGYRIKFQPKSVTWEQEPQTVKVWFKQRT 276 Sbjct: 235 294 Query: 277 RWAKGNIYVIVKNIPLLFDR 296 Sbjct: 295 314 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,129,824 Number of extensions: 1080846 Number of successful extensions: 3247 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 3240 Number of HSP's successfully gapped: 72 Length of query: 416 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 307 Effective length of database: 25,807,025 Effective search space: 7922756675 Effective search space used: 7922756675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 117 (49.7 bits)