BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0232.0001.p
         (284 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0535 [T] COG2199 FOG: GGDEF domain                                 265   6e-71

>lin0535 [T] COG2199 FOG: GGDEF domain
          Length = 284

 Score =  265 bits (677), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 123/284 (43%), Positives = 193/284 (67%)

Query: 1   VRRNRSSLFSDLAFLVFLVLNFICIVFIAGSPDHYIQXXXXXXXXXXXXXVTYFTTVTAG 60
           +++  ++LF+D+ FL F++L FI I F+  +PD Y++             +TYFT +T G
Sbjct: 1   MKKITNNLFADIGFLFFILLCFITIGFMINTPDEYLRNIILLNITFLLVIITYFTNLTLG 60

Query: 61  LVLNLAFIFGYGFFVLYQTVSEGGTIGVNTYFWLIMTPLLTVVIWVFTSRTRELQAENEL 120
           L+LN+ +IF Y  +++Y+ V+     G+ +Y+WLI+TPL TV   +FT  T  LQ EN  
Sbjct: 61  LILNVLYIFIYATYIIYEIVANQMAYGIGSYYWLIITPLFTVASAMFTRNTSRLQEENTK 120

Query: 121 LEKKTANLAAVDENTDLRNIISFQKDASLFTGISTRYSIPLTLLVVKVKYWSEIRRLIPE 180
           ++++   L  +D+ T L+NI+SFQ D  +F+ IS RY +PL+L+V+KV++W E++R   E
Sbjct: 121 IKQQNLYLGTIDQETLLKNIVSFQNDERIFSSISRRYDLPLSLMVIKVRHWRELKRFQSE 180

Query: 181 EQLSEAIYDVSQLSQSSIRTNDALYLLDKEEATWGLLLFTDREGAKIVIERIKFKLQELN 240
           +++  A+ D+S + ++ IRT+D LYLLDK++ATWGLLL TD  G K+V +RIK ++ E N
Sbjct: 181 DEMRLALQDISAVLETCIRTSDVLYLLDKDDATWGLLLLTDEPGGKLVADRIKSRIAEAN 240

Query: 241 DTEFSAKYKVNLGLKIGAVQYEAETIENPFDFILQAKKQLEYDV 284
             EF+AKY+V L L+IG  Q+++E ++ P DFI  A K+LEYDV
Sbjct: 241 TEEFAAKYRVKLELRIGTSQFDSEKVKTPLDFIDLATKELEYDV 284


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 18,039,243
Number of extensions: 674869
Number of successful extensions: 1356
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1357
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 179
Effective length of database: 26,268,361
Effective search space: 4702036619
Effective search space used: 4702036619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 115 (48.9 bits)