BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0068.p (1262 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2014 [M] COG4932 Predicted outer membrane protein 523 e-148 BH0361 [M] COG4932 Predicted outer membrane protein 512 e-144 L148778 [M] COG4932 Predicted outer membrane protein 337 7e-92 lin2281 [M] COG4932 Predicted outer membrane protein 140 1e-32 lin2282 [M] COG4932 Predicted outer membrane protein 108 8e-23 >BH2014 [M] COG4932 Predicted outer membrane protein Length = 1816 Score = 523 bits (1346), Expect = e-148, Method: Compositional matrix adjust. Identities = 355/953 (37%), Positives = 513/953 (53%), Gaps = 39/953 (4%) Query: 31 AAEITDNIITSVTMAVYDNGVPVTDVV--YKQGAEVKLTYDWELPD-NTYQEGDTYSFEL 87 A+EI +NIIT V + D + D G + +TY W LP+ + Y G T++F+L Sbjct: 228 ASEIAENIITGVEVRDEDGNILQADSTNHLDLGDPIGITYHWSLPNGHGYTAGSTFTFQL 287 Query: 88 PDHFVLASDIMGTPLQADGLTLGHFDVLKGNPNKVIMTFGQDVDKYFGVHGSFSINTKFD 147 PD F L +DI PL +G +G F + + V MTF + +++ F ++G + T+ Sbjct: 288 PDVFHLYNDIENEPLVFNGTEVGTFTITQDG--TVTMTFNEMIEQLFNINGMLQVWTEI- 344 Query: 148 KASFTETTEQHIVFPVNGGNQ-TVTLEFVPDNASIIEKSGRPVGTNKDGLNAKQITWTVD 206 K + IVF V + ++F +AS+I+K G G NA +ITWTVD Sbjct: 345 KEDLQGDVRRDIVFEVKDEELLRLPVQFRVPSASMIDKQG----IVDRGYNATEITWTVD 400 Query: 207 VNKVLSSVYDASVTDVIPAGLALTDPLDVKVYELNVKLDGSAVQGAEIPSSQYAVTDPSG 266 NK + + +A + D I G AL ++VYELNV+L+GS VQG + S Y++ G Sbjct: 401 FNKQMREIDNAVLRDPIQLGQAL-QAGSIEVYELNVQLNGSVVQGDLVDPSNYSIGQIDG 459 Query: 267 NLNVAFKQSPITGAYRIQFTTDITDLTKKSFTNEASLKGTALPASKSSATVNVSYGTPLK 326 + + I AYR+ F TDITD S+ N A+L G + ++A+V G P+ Sbjct: 460 D-DFQINFGDIDSAYRVVFKTDITDGDATSYQNVATLDGDNIDPMPANASVGTQRGVPIA 518 Query: 327 KTSSAYDPNTQTTTWEIDYNYNELPVAQANAVLKDYFDNTQELVADSLQVFPVSFLTNAG 386 KTS+ Y+ TQT +WEI YNYNE VA+A+A+L D+F N+QEL+ S +V ++ N G Sbjct: 519 KTSTGYNSATQTISWEIRYNYNEKTVAEADAILTDWFTNSQELIPGSFRVIRMTIDEN-G 577 Query: 387 GTVGDTPVSNYTLISPSTAPSGKNGFELKFNSDINSAYKIKYKTKATGRVEKDTTVTNTV 446 D VSN+TL S A +NGFEL+FN DIN+AYKI Y+T ++ RV + T+ NTV Sbjct: 578 NATEDEEVSNFTLTETSNA--SQNGFELQFNEDINNAYKIVYQTTSSERVLGNQTIQNTV 635 Query: 447 YSGDTYETGT-RSIRQVIIAKTLPSSGIDYANKKVKWSVTINADSYQMDNVIVKDAFPNK 505 +G+ G RSI QV+ K + +Y K + W++T+N DSY+M NV + D F N Sbjct: 636 ETGEGRTAGANRSIGQVVFHKRHGTP--NYQEKTIPWTITLNDDSYEMTNVTITDVFNNG 693 Query: 506 GLKIIPGSIVVKKGDTVITTG----FSIQNEIPDTGFEVKFNSQITGPYTITYETYFDNQ 561 GL +I G+ ++ G T + G F++ GF ++F + IT P+ I Y T FD + Sbjct: 694 GLTLIDGTFTIRSGSTTLVQGVDYTFALDGA---DGFTIEFTNPITTPHVIEYVTAFDYE 750 Query: 562 WLASDWLTTDAKFVNRATVEWTKPGSADVNTKTVTASFDPKPAEKANGYKNGSYNASSKE 621 + N AT+EW G D + TA F P + NG+KNGSYNA +KE Sbjct: 751 ARQD---KSRNVLDNVATLEWVPEGETDSRSMQATAVFAPDSNTRNNGFKNGSYNAVTKE 807 Query: 622 IIWSVGVNYNRNPLNSAEVTDTIEGKQEYVPGSVEIYNMIVAKNGDYSQGTAKLTLNTDY 681 I W++GVNYN L+ A V D I+ Q V S+E++ M + + LT DY Sbjct: 808 ITWNIGVNYNLQELHDAVVEDFIQEGQHLVADSIEVFEMGLTGGANGVNQGDLLTEGVDY 867 Query: 682 ---TVSYNEXXXXXXXXXXXXIESGYIINFKTSLKGKLVDSPAITNTANLYNEGKEESKD 738 V + I+S Y I+FKTSL +L+ N A L + ++ + Sbjct: 868 DLVMVQDGDGNPGFRVEFRDTIDSPYWISFKTSLDERLI-KQTYQNEAILSSSNTDDFR- 925 Query: 739 LTASLTIPKANEFVQKSGSQSNTKIKWTVSINYSQSYIEDAVVTDDPSDNQILLADSFKL 798 L A++++ E+V KSG Q I W ++INY+QS + +A + D PS NQILL DSF+L Sbjct: 926 LDAAVSVQHGGEYVNKSGVQDGRVIDWRININYTQSTVTNAKIVDVPSPNQILLEDSFQL 985 Query: 799 YATTVNPAGDVAKTGTPLVDGKDYELTITTDLDSGKQQFVLKFKAPIEKAYILEYESLIV 858 ++T V G + K G PL G DY L I TD D G + F L F I++AYILEY+S I Sbjct: 986 FSTNVATNGTITK-GAPLERGVDYILEIFTDED-GNETFELSFPNVIDRAYILEYKSFIY 1043 Query: 859 ANNNDKVTNKVGLTGKN-XXXXXXXXXXXXXVALSSADGVGTGTRKALKIIKADGADQSK 917 A NN+ V+N+V G V LS G G+G R ++++ K D Sbjct: 1044 AQNNEFVSNQVSFEGDEITTNESTNSSESIQVRLSGGSGTGSGERGSIEVTKVDATSGET 1103 Query: 918 LSGATFALYRKSGSSEVLFNTLTTDANGEAVFKNLWPGKYLLQEISAPSGYVL 970 L+GATF LY +G E++ T+ T +G A F NL Y+L+E SAP GY++ Sbjct: 1104 LAGATFVLYDSTG--EIVLRTVVTGEDGIATFANLMYDDYILRETSAPEGYLV 1154 >BH0361 [M] COG4932 Predicted outer membrane protein Length = 1661 Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust. Identities = 370/993 (37%), Positives = 520/993 (52%), Gaps = 55/993 (5%) Query: 26 NTQAHAAEITDNIITSVTMA------VYDNGVPVTDVVYKQGAEVKLTYDWELPDNT-YQ 78 +T+A +EIT+NI+TSV + ++ N P D+ G+ V++ Y+W+L +N Y Sbjct: 213 STEASGSEITENILTSVQLKDEEGNLIHANENP--DLRPALGSAVEVIYNWKLRNNHGYT 270 Query: 79 EGDTYSFELPDHFVLASDIMGTPL---QADGLTLGHFDVLKGNPNKVIMTFGQDVDKYFG 135 G T++F+LPD F ++I PL QA+ T+G F+V V MTF + +++ Sbjct: 271 AGSTFTFQLPDAFRFYNNIENEPLVFTQAN-TTVGSFNVT--TDGTVTMTFNESIEQLSN 327 Query: 136 VHGSFSINTKFDKASFTETTEQHIVFPVNGGN-QTVTLEFVPDNASIIEKSGRPVGTNKD 194 + G+ + T+F + Q I F ++ +EF I+K G T Sbjct: 328 IRGNLHLWTEF-REDLQGDRLQVIHFEAKDEVIASIPVEFENATGHSIDKRGVVDQT--- 383 Query: 195 GLNAKQITWTVDVNKVLSSVYDASVTDVIPAGLALTDPLDVKVYELNVKLDGSAVQGAEI 254 NA +I WTVD NK L + A + D I G AL +KVYELNV+LDGS VQGAE+ Sbjct: 384 -FNATEIKWTVDFNKQLQPIEQAILKDPIQTGQALR-AGSIKVYELNVQLDGSVVQGAEV 441 Query: 255 PSSQYAVTDPSGN-LNVAFKQSPITGAYRIQFTTDITDLTKKSFTNEASLKGTALPASKS 313 S Y + GN + F I AYR++F TDIT+ + N A+L G + + Sbjct: 442 DPSSYTIEQVDGNDFQIVF--GSIDSAYRVEFITDITNRNATYYMNRATLTGENIDDLSA 499 Query: 314 SATVNVSYGTPLKKTSSAYDPNTQTTTWEIDYNYNELPVAQANAVLKDYFDNTQELVADS 373 A V GTPL K S+ YDP TQT TWEI YNY+ + QA+AVL D F N+ L+ DS Sbjct: 500 DAGVWTHRGTPLSKASTGYDPATQTITWEIKYNYDGKLIRQADAVLTDLFTNSHILLDDS 559 Query: 374 LQVFPVSFLTNAGGTVGDTPVSNYTLISPSTAPSGKNGFELKFNSDINSAYKIKYKTKAT 433 ++V+ V+ + G V VSNY++ T+ NGF L+F D+ +YKI Y+T A Sbjct: 560 MKVYRVT-INEHGNEVSTEEVSNYSV--NGTSDEDHNGFVLQFTEDVQDSYKIIYQTTAA 616 Query: 434 GRVEKDTTVTNTVYSGDTYETGTRSIRQVIIAKTLPSSGIDYANKKVKWSVTINADSYQM 493 R +D T+ NTV +GD +R++ Q K IDYA K V W N + ++ Sbjct: 617 ERGFEDATIENTVTTGDHEAKTSRTVHQQTFNKW--RGQIDYAKKTVAWEYFFNEERQEL 674 Query: 494 DNVIVKDAFPNKGLKIIPGSIVVKK-----GDTVITTGFSIQNEIPDTGFEVKFNSQITG 548 NVI+ D F N GL +I S + + + G + +TGF ++F + IT Sbjct: 675 TNVIISDVFANGGLTLIEDSFTITSFPSTDEEVTLENGNDYRVVTNETGFTIEFMAPITE 734 Query: 549 PYTITYETYFDNQWLASDWLTTDAKFVNRATVEWTKPGSADVNTKTVTASFDPKPAEKAN 608 P+ + YET FD + A D A N AT++W + S + K + F P + N Sbjct: 735 PHHVRYETTFD--FDARD-DKNKAFLENGATLQW-QTSSGNTMKKEGKSEFHPDTFTRNN 790 Query: 609 GYKNGSYNASSKEIIWSVGVNYNRNPLNSAEVTDTIEGKQEYVPGSVEIYNMIVAKNGD- 667 G+KNG YNA+SKEI W++GVNYN + L A V D + Q + S+E+Y M + D Sbjct: 791 GFKNGLYNATSKEITWNIGVNYNLHTLEHAIVEDFVREGQRLLMDSIEVYEMGLLGWWDG 850 Query: 668 YSQGTAKLTLNTDYTVSY---NEXXXXXXXXXXXXIESGYIINFKTSLKGKLVDSPAITN 724 SQG +KL TDY + E I+S Y I FKTSL+ L+ S N Sbjct: 851 VSQG-SKLEEGTDYVIEAVEDGEGHPGFQVRFLNTIDSAYWITFKTSLEDTLIKS-NYPN 908 Query: 725 TANLYNEGKEESKDLTASLTIPKANEFVQKSGSQSNTKIKWTVSINYSQSYIEDAVVTDD 784 A L ++ E+ ++ AS+++ EFV KSG+Q+ I W+++IN+SQS I +A + D+ Sbjct: 909 RATLKSDNAEDF-NVDASVSVRHGGEFVTKSGAQNGRLIDWSLNINFSQSSISNAKIVDE 967 Query: 785 PSDNQILLADSFKLYATTVNPAGDVAKTGTPLVDGKDYELTITTDLDSGKQQFVLKFKAP 844 PS NQILL D+F+LYAT V P G + K G L KDY L I TD G Q F L+F Sbjct: 968 PSVNQILLEDTFRLYATNVQPNGTMTK-GDELERDKDYTLDIRTD-GEGNQHFELQFTED 1025 Query: 845 IEKAYILEYESLIVANNNDKVTNKVGLTGKNXXXXXXXXXX-XXXVALSSADGVGTGTRK 903 I+ YILEY+S I A N D VTN V L G V LS G G+G Sbjct: 1026 IDTGYILEYQSFINARNGDVVTNNVKLEGDQLTTEEVTESSGAVSVRLSGGAGTGSGETG 1085 Query: 904 ALKIIKADGADQSKLSGATFALYRKSGSSEVLFNTLTTDANGEAVFKNLWPGKYLLQEIS 963 +L++ K D L GATF LY G E TL T +G+A F NL G YLL+E S Sbjct: 1086 SLEVTKVDADTGEVLQGATFTLYDSEG--EFAIRTLETGEDGKATFVNLLYGDYLLKEDS 1143 Query: 964 APSGYVLD-SGKKAVTFDSTTAIVEEFKVYNQK 995 AP GY++ + + VT D+ ++ E V N+K Sbjct: 1144 APEGYLVGINDTQRVTIDT---VLHEVTVENEK 1173 >L148778 [M] COG4932 Predicted outer membrane protein Length = 1983 Score = 337 bits (865), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 276/942 (29%), Positives = 465/942 (49%), Gaps = 69/942 (7%) Query: 62 AEVKLTYDWELPDNTY--QEGDTYSFELPDHFVLASDIMGTPLQADGLTLGHFDVLKGNP 119 AEV++ Y W +P++ + GD + F+LPD G ++ +LG + N Sbjct: 239 AEVQIDYTWSIPEDILPLKSGDYFDFKLPD---------GVTIEQATSSLGDYGTYTINA 289 Query: 120 NKVI-MTFGQDVDKYFGVHGSFSINTKFDKASFTETTEQHIVFPVNGGNQTVTLEFVPDN 178 + + F + V+ Y + G+F + FDK E + P + P Sbjct: 290 DGTVRFVFNEKVETYHDIKGTFHYDAHFDKTIVP--GEVVVDTPTEENFPPSEIHVRPTY 347 Query: 179 ASIIEKSGRPVGTNKDGLNAKQITWTVDVNKVLSSVYDASVTDVIPAGLALTDPLDVKVY 238 I+KSG T N ++ W +++N+ L+++ +A++TD +P G V++Y Sbjct: 348 DQAIDKSGHFDKTP----NPSEVIWEININRPLNTMENATLTDPMPEGTTYES---VEIY 400 Query: 239 ELNVKLDGSAV----QGAEIPSSQYAVTDPSGNLNVAFKQSPITGAYRIQFTTDITDLTK 294 V +G + + + + Y V D +G + K + A+ + +TT I + + Sbjct: 401 PETVGKNGEIISIDKEHPLVKGTDYTV-DSNGKITFIGKYATTDQAFNVVYTTTIDESSF 459 Query: 295 KSFTNEASLKGTAL-----PASKSSATVNVSYGTPLKKTSSAYDPNTQTTTWEIDYNYNE 349 S K TA + SA+V Y P+KK N Q W I+YNYNE Sbjct: 460 PEKEGAVSFKNTATLNDGKTDTNESASVTAQYKGPIKKNGPFTTGNDQIYNWNIEYNYNE 519 Query: 350 LPVAQANAVLKDYFDNTQELVADSLQVFPVSFLTNAGGTVGDT--PVSNYTLISPSTAPS 407 +A + ++D + ELV S++++ ++F +N G +Y L+ P Sbjct: 520 -KNHKAGSFIEDTMSDAIELVNGSVKLYKITFDSNGKEIKGAQLKEGEDYKLVQD---PD 575 Query: 408 GKNGFELKFNSDINSAYKIKYKTKATGRVEKDTTVTNTVYS--GDTYETGTRSIRQVIIA 465 F+++F +DI+ A K++Y+TK V+ + T+ N+V + GD E+G + +Q I+ Sbjct: 576 NPQKFKIEFITDIDYAVKVEYQTKVKDIVDGNVTIDNSVTTDTGDNSESGGNATQQGIVK 635 Query: 466 KTLPSSGIDYANKKVKWSVTINADSYQMDNVIVKDAFPNKGLKIIPGSI-VVKK--GDTV 522 IDY N+++ W + IN+ Y M+N ++D ++GL + + ++ K G+ V Sbjct: 636 NI--DGDIDYENREIPWKIDINSPGYWMENWSLEDKM-SEGLTFLENTFQIIDKTAGNKV 692 Query: 523 IT-TGFSIQNEIPDTGFEVKFNSQIT----GPYTITYETYFDNQWLAS-DWLTTDAKFVN 576 ++ T +++ GF V FNS + Y I Y+T FD + + D KFVN Sbjct: 693 LSPTEYTLIKTT--AGFSVSFNSPLKEGTDHKYQIKYKTKFDTSVIDNGSGHEGDIKFVN 750 Query: 577 RATVEWTKPGSADVNTKTVTASFDPKPAEKANGYKNGSYNASSKEIIWSVGVNYNRNPLN 636 A++ W D +T F P P + NG K+GSYNA+SK+I W++ N+N+ L+ Sbjct: 751 DASMTWKDKNGGD-HTNNDHKEFKPIPPFQYNGQKSGSYNATSKKITWTIAANFNQQELS 809 Query: 637 SAEVTDTIEGKQEYVPGSVEIYNMIVAKNGDYSQGTAKLTLNTDYTVSYNEXXXXXXXXX 696 +A +TD I Q YV GS ++Y + KNG Y+ G A++T +D + E Sbjct: 810 NASITDPISDDQNYVSGSAKVYEATINKNGTYTLG-AEVT--SDMGIKIVESKGSVKVEL 866 Query: 697 XXXIESGYIINFKTSLKGKLVDSPAITNTANLYNEGKEESKDLTASLTIPKANEFVQKSG 756 Y++ F+TSL+G L++ N A N K+ S DL+AS+T EFV K G Sbjct: 867 PDGSTKAYVLIFETSLEGNLINQKEYKNKATFTN--KDISHDLSASVTPAHQGEFVTKDG 924 Query: 757 SQSNTK---IKWTVSINYSQSYIEDAVVTDDPSDNQILLADSFKLYATTVNPAGDVAKTG 813 SQS+T + W +++N SQS +++ VTD+PS NQ ++A +Y T+++ +G++ + Sbjct: 925 SQSSTDSNYVNWKLTVNASQSTLKNVEVTDNPSSNQYIVAKDILIYGTSIDASGNITENK 984 Query: 814 TPLVD-GKDYELTITTDLDSGKQQFVLKFKAPIEKAYILEYESLIVANN-NDKVTNKVGL 871 +++ GKDY + I TD +G Q +KF + I AY++EY +LI ++ ND VTN+ + Sbjct: 985 NIILEQGKDYSVDIQTDNSTGAQTVKIKFLSEINTAYVVEYRALITSDKANDVVTNQAHI 1044 Query: 872 TGKNXXXXXXXXXXXXXVALSSADGVGTGTRKALKIIKADGADQSKLSGATFALYR--KS 929 TG N V +++ +G G++ ++ + K G ++KL+GA L+ Sbjct: 1045 TGDN--EKIIEQDVEKDVPVTNHNGSANGSKGSVTLEKV-GPGKAKLAGAHLQLWSIGTD 1101 Query: 930 GSSEVLFNTLTTDANGEAVFKNLWPGKYLLQEISAPSGYVLD 971 G + L TD NG+ NL YLL E AP+GY LD Sbjct: 1102 GKKDKLIREGDTDKNGDLKLGNLRVTDYLLIETKAPTGYTLD 1143 >lin2281 [M] COG4932 Predicted outer membrane protein Length = 1622 Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 243/990 (24%), Positives = 419/990 (42%), Gaps = 115/990 (11%) Query: 32 AEITDNIITSVTMAVYDNG----VPVTDVVYKQGAEVKLTYDWELPDNTYQEGDTYSFEL 87 A I DNI T+V + +NG + T+ + K G V L ++ Y+ GDT+ L Sbjct: 146 AVIADNIFTAVKV---ENGTGNELSTTNRI-KNGGAVVLKMNFTFSGKNYKAGDTFKTVL 201 Query: 88 PDHFVLASDIMGTPLQADGL--TLGHFDVLKGNPNKVIMTFGQDVDKYFGVH-GSFSINT 144 P+ F + T L D L T +D L + ++ +TF +D GV G++ I Sbjct: 202 PETFNFGT----TNLTGDFLPSTEAKWD-LNASTRELTITFLKD-----GVQEGNYDIEL 251 Query: 145 KFDKASFTET--TEQHIVFPVNGGNQTVTLEFVP--DNASIIEKSGRPVGTNKDGLNAKQ 200 SF+ET T Q VF GGN LE +P D A+ + P N D Sbjct: 252 STALKSFSETDKTRQEAVFNTAGGNTIYQLEIIPEVDKATQVMLEATPGKLNPD---KAT 308 Query: 201 ITWTVDVNKVLSSVYDASVTDVIPAGLALTDPLDVKVYELNVKLDGSAVQGAEI--PSSQ 258 + ++ K + + + ++D G + + +KVY ++ G+ + ++ + Sbjct: 309 VDARFNLTKESNELGELRLSDTAYGGSTIINRNSIKVYSTDISAKGTFIGSKQLLNEGTD 368 Query: 259 YAVTDPSGNLNVAFKQSPITGAYRIQFTTDITDLTKKSFTN---EASLKGTALPASKSSA 315 Y + L + K+ Y++ + I D T S T A+ G++ S S Sbjct: 369 YELIYAPSGLTIKLKEGLKAKGYQVTYERSI-DKTNTSLTTLGTSATTVGSSGMLSNGSM 427 Query: 316 TVNV---SYGTPLKKTSSAYDPNTQTTTWEIDYNYNELPVAQANAVLKDYF-DNTQELVA 371 T++V +Y KK + Y+P TQ W I+ NY +L + VLKD D+ VA Sbjct: 428 TISVTIKAYDHLTKK--AVYNPVTQCIDWTINVNY-DLANLTPDTVLKDVLTDDNVSYVA 484 Query: 372 DSLQVFPVSFLTNAGGTV-GDTPVSNYTLISPSTAPSGKNGFELKFNSDINSAYKIKYKT 430 DSL++ V+F +G V G+ +++T+ + S F + + AY++ Y T Sbjct: 485 DSLKIKQVTFNEESGEVVIGEDASNDWTV----STISDNGSFNMNYKKTDKKAYQVTYST 540 Query: 431 KATGRVEKDTTVTNTVYSGDTYETGTRSIRQVIIAKTL---PSSGIDYANKKVKWSVTIN 487 K T + + N V T E G ++ L + IDY N + W++T+N Sbjct: 541 KLTDFSPRK--IKNEV----TDEKGVKATENFDFKPDLLKKEAGEIDYYNNTMDWTITVN 594 Query: 488 ADSYQMDNVIVKDAFPNKGLKIIPGSIVVKKGDT---VITTG--FSIQNEIPDTGFEVKF 542 ++ M N+ + D F +I S+ D+ ++T G F+IQ ++ GF++K Sbjct: 595 SEGINMQNINIVDEFSTGVKSLISYSVYAYPSDSGYNILTEGRDFTIQKDVTPDGFKIK- 653 Query: 543 NSQITGPYTITYETYFDNQWLASDWLTTDAKFVNRATVEWTKPGSADVNTKTVTASFDPK 602 + G Y T D N+A+ + GS ++T+ A P+ Sbjct: 654 ---LIGNYATTDNKIVVKMKTKIDLTDGANTLNNKASFSYFD-GSLTQYSETIKAEATPE 709 Query: 603 PAEKANGYKNGSYNASSKEIIWSVGVNYNRNPLNSAEVTDTIEGKQEYVPGSVEIYNMIV 662 + ANG K G +N ++ EI W V VN N + D +V GS++ N++ Sbjct: 710 TSILANGGKVGKWNPATGEINWIVSVNAMGKKYNKLVLDDEFLDGTTFVEGSLQYRNVVN 769 Query: 663 AKN-GDYS-----QGTAKLTLNTDYTVSYNEXXXXXXXXXXXXIESGYIINFKTSLKGKL 716 + D S +GT + +Y + + + +KT K Sbjct: 770 SSELTDLSIPLEIKGTLAQVGDANYPTKIDTSANKIHLEFGNLDTNRVFVKYKTKPKDNW 829 Query: 717 VDSPAITNTANLYNEGKEESKDLTASLTIPKANEFVQKSGSQSNT---KIKWTVS-INYS 772 S + N A + + G +E T + NE ++ +G+ +T K+ W + +N + Sbjct: 830 FFSQWVNNKAIVSDNGADEQIYETKEFAFLQ-NEVIKVAGNIDSTFGNKVNWNMELLNIT 888 Query: 773 -QSYIEDAVVTDDPSDNQI---LLADSFKLYATTVNPAGDVAKTGTPLVDGKDYELTITT 828 + + + V+T+ + +SF++ T KT P ++ ++Y++T Sbjct: 889 PERTLSNPVITNRLEQGNTGAQFIKNSFQVINT---------KTNEP-INEENYDITFEG 938 Query: 829 DLDSGKQQFVLKFK-----APIEKAYILEYESLIVANNNDKVTNKVGLTGKNXXXXXXXX 883 + F ++FK API+ + Y ++ + + ++N+ + ++ Sbjct: 939 N------TFTIQFKNYTAMAPIK----VNYSTISLLSG--PISNETTVEAED-FSNVPMF 985 Query: 884 XXXXXVALSSADGVGTGTRKA----LKIIKADGADQS-KLSGATFALYRKSGSSEVLFNT 938 VA+S VGTG+ A +KI K D D + KL GA F LY G E Sbjct: 986 FKKRNVAVSPVFTVGTGSGIATIGTIKITKVDEDDTTKKLEGAKFQLYTLDG--EKSGQE 1043 Query: 939 LTTDANGEAVFKNLWPGKYLLQEISAPSGY 968 +TT++ GE + + GKY L E AP GY Sbjct: 1044 ITTNSEGEILLDGIQSGKYKLVETKAPEGY 1073 >lin2282 [M] COG4932 Predicted outer membrane protein Length = 1806 Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 163/655 (24%), Positives = 275/655 (41%), Gaps = 59/655 (9%) Query: 32 AEITDNIITSVTMAVYDNGVPVTDVVYKQGAEVKLTYDWELPDNTYQEGDTYSFELPDHF 91 A ITDNI VT+ + T + G+ V L ++ Y+ GDT++ LPD F Sbjct: 151 AAITDNIFNKVTLKDGNGDEINTSDRIQNGSGVVLNMNFAFSGKNYKAGDTFTTVLPDAF 210 Query: 92 VLASDIMGTPLQADGLTLGHFDVLKGNPNKVIMTFGQDVDKYFGVH-GSFSIN--TKFDK 148 + + DV ++ +TF +D G+ G + +N T F Sbjct: 211 NFGNKNLSGNFLPSTEAEWTLDV---KTRELTITFLKD-----GIQEGDYDVNISTAFKV 262 Query: 149 ASFTETTEQHIVFPVNGGNQTVTLEFVP--DNASIIEKSGRP--VGTNKDGLNAKQITWT 204 + TE T Q +VF G + +E VP + + + P V K ++AK Sbjct: 263 FTSTEETIQEVVFKTAGKDTVYQIEVVPVVTYPTTVSVTANPGVVNPTKGQVDAK----- 317 Query: 205 VDVNKVLSSVYDASVTDVIPAGLALTDPLDVKVYELNVKLDGSAV--QGAEIPSSQYAVT 262 ++ K + + + D G D +KVY +V G+ + + + + Y +T Sbjct: 318 FNLTKEKDAKGELKLNDYASGGTTTIDKDTIKVYSSDVSAGGTFIGTKKLLVEGTDYTLT 377 Query: 263 DPSGNLNVAFKQSPITGAYRIQFTTDI---TDLTKKSFTNEASLKGTALPASKSS----A 315 S L V+ Y++ + I +D T ++ + + ++ SS A Sbjct: 378 YSSTALVVSLNGGLAGKGYQVTYDRTINKPSDSLSYMSTQAYTVGDSGILSTNSSYVYLA 437 Query: 316 TVNVSYGTPLKKTSSAYDPNTQTTTWEIDYNYNELPVAQANAVLKDYFDNTQELVADSLQ 375 N + L+K ++ Y+ TQ+ W I++NY++ ++ + DN E VADSL+ Sbjct: 438 MTNYKH---LEKKAT-YNGTTQSIDWVINFNYDQDEISPTTVLTDVLADNDVEYVADSLK 493 Query: 376 VFPVSFLTNAG-GTVGDTPVSNYTLISPSTAPSGKNGFELKFNSDINSAYKIKYKTKATG 434 + V+F T G +G S++T ++ S F L + + +AY+I Y TK T Sbjct: 494 IKRVTFNTTTGVPIIGSDASSDWT----TSTISNNGNFNLTYKNTNTNAYQITYSTKITD 549 Query: 435 RVEKDTTVTNTVYSGDTYETGTRSIRQVIIAKTL---PSSGIDYANKKVKWSVTINADSY 491 KD + N + T E G + + I L + IDY N + W +T N+D Sbjct: 550 F--KDRKIKNEI----TDENGVSADATIAIQPDLLKKEAGSIDYFNNTMSWKITANSDKI 603 Query: 492 QMDNVIVKDAFPNKGLKIIPGSIVVKKGD----TVITTG--FSIQNEIPDTGFEVKFNSQ 545 +MDN+ + D F + G+K + V D V+T G F+I + GF + Q Sbjct: 604 KMDNLNITDKF-STGIKSLKSYTVRAYTDNFTSVVLTEGKDFTINENVTPAGFYI----Q 658 Query: 546 ITGPYTITYETYFDNQWLASDWLTTDAKFVNRATVEWTKPGSADVNTKTVTASFDPKPAE 605 + G Y T + + D N+A + + G+ + +TAS P Sbjct: 659 LIGDYASTDKKIVVDIVTNIDLSDVTKTIDNKAFISYYDGGTIKY-VEEITASATPDAKM 717 Query: 606 KANGYKNGSYNASSKEIIWSVGVNYNRNPLNSAEVTDTIEGKQEYVPGSVEIYNM 660 NG K G+YN+++ I W V N ++ DTI YV GS++ N+ Sbjct: 718 MTNGGKYGAYNSTTGNIDWIVSANAMAKSYDNLIFDDTIPTGLTYVEGSLQYRNV 772 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 902 RKALKIIKADGADQSKLSGATFALYRKSGSSEVLFNTLTTDANGEAVFKNLWPGKYLLQE 961 + LKI K D + K++G+TF + K N LT ANGEA +L PG YL++E Sbjct: 38 KTTLKITKEDKDTKEKINGSTFEIKNKETGKT---NNLTISANGEATMDSLLPGDYLVKE 94 Query: 962 ISAPSGYVLDSGKKAVTF 979 AP GY LD + +VT Sbjct: 95 KVAPKGYTLDEKEYSVTL 112 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.310 0.130 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 81,893,378 Number of extensions: 3337366 Number of successful extensions: 4524 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 4391 Number of HSP's successfully gapped: 13 Length of query: 1262 Length of database: 38,378,431 Length adjustment: 118 Effective length of query: 1144 Effective length of database: 24,769,019 Effective search space: 28335757736 Effective search space used: 28335757736 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 122 (51.6 bits)