BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0065.p (162 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0549 [TK] COG2197 Response regulator containing a CheY-like r... 147 7e-36 STM0117 [E] COG0440 Acetolactate synthase, small (regulatory) su... 134 8e-32 ZilvH [E] COG0440 Acetolactate synthase, small (regulatory) subunit 134 8e-32 ECs0082 [E] COG0440 Acetolactate synthase, small (regulatory) su... 134 8e-32 ilvH [E] COG0440 Acetolactate synthase, small (regulatory) subunit 130 7e-31 >STM0549 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 210 Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 6/161 (3%), Positives = 26/161 (16%), Gaps = 3/161 (1%) Query: 3 VMRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQ 62 + + + + + +++ + + Sbjct: 5 SVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELPGTDG 64 Query: 63 IEKQLYKLIDVIKVVDLGSKP--MVARELALIKVKAEPAERPEIMGVVETFRASVVDIGT 120 L I+ A + + + + A + + Sbjct: 65 FTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGAN-GFVSKRKDLNDIYNAVKMILSG 123 Query: 121 TSLLVQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIRGN 161 S + + V + Sbjct: 124 YSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRYLANG 164 >STM0117 [E] COG0440 Acetolactate synthase, small (regulatory) subunit Length = 163 Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 1/159 (0%) Query: 4 MRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQI 63 MR ++VL+ ++ G L RV GLF +RG+NIES+TV +++ LSRM I T+GD+ LEQI Sbjct: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 Query: 64 EKQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSL 123 EKQL+KL+DV++V +LG V RE+ L+K++A R E+ E FR ++D+ T Sbjct: 61 EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGREEVKRNTEIFRGQIIDVTPTLY 120 Query: 124 LVQVVGDTQKIDAMIELLKPYG-IKELSRTGVTAMIRGN 161 VQ+ G + K+DA + L+ I E++R+GV + RG+ Sbjct: 121 TVQLAGTSDKLDAFLASLRDVAKIVEVARSGVVGLSRGD 159 >ZilvH [E] COG0440 Acetolactate synthase, small (regulatory) subunit Length = 163 Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 68/159 (42%), Positives = 105/159 (66%), Gaps = 1/159 (0%) Query: 4 MRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQI 63 MR ++VL+ ++ G L RV GLF +RG+NIES+TV +++ LSRM I T+GD+ LEQI Sbjct: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 Query: 64 EKQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSL 123 EKQLYKL+DV++V +LG V RE+ L+K++A R E+ E FR ++D+ + Sbjct: 61 EKQLYKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120 Query: 124 LVQVVGDTQKIDAMIELLKPYG-IKELSRTGVTAMIRGN 161 VQ+ G + K+DA + ++ I E++R+GV + RG+ Sbjct: 121 TVQLAGTSDKLDAFLASIRDVAKIVEVARSGVVGLSRGD 159 >ECs0082 [E] COG0440 Acetolactate synthase, small (regulatory) subunit Length = 163 Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 68/159 (42%), Positives = 105/159 (66%), Gaps = 1/159 (0%) Query: 4 MRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQI 63 MR ++VL+ ++ G L RV GLF +RG+NIES+TV +++ LSRM I T+GD+ LEQI Sbjct: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 Query: 64 EKQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSL 123 EKQLYKL+DV++V +LG V RE+ L+K++A R E+ E FR ++D+ + Sbjct: 61 EKQLYKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120 Query: 124 LVQVVGDTQKIDAMIELLKPYG-IKELSRTGVTAMIRGN 161 VQ+ G + K+DA + ++ I E++R+GV + RG+ Sbjct: 121 TVQLAGTSDKLDAFLASIRDVAKIVEVARSGVVGLSRGD 159 >ilvH [E] COG0440 Acetolactate synthase, small (regulatory) subunit Length = 163 Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 105/159 (66%), Gaps = 1/159 (0%) Query: 4 MRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQI 63 MR ++VL+ ++ G L RV GLF +RG+NIES+TV +++ LSRM I T+GD+ LEQI Sbjct: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 Query: 64 EKQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSL 123 EKQL+KL+DV++V +LG V RE+ L+K++A R E+ E FR ++D+ + Sbjct: 61 EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120 Query: 124 LVQVVGDTQKIDAMIELLKPYG-IKELSRTGVTAMIRGN 161 VQ+ G + K+DA + ++ I E++R+GV + RG+ Sbjct: 121 TVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD 159 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,958,768 Number of extensions: 369153 Number of successful extensions: 989 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 983 Number of HSP's successfully gapped: 14 Length of query: 162 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 64 Effective length of database: 27,075,699 Effective search space: 1732844736 Effective search space used: 1732844736 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 111 (47.4 bits)