BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0057.p (350 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yufN [R] COG1744 Uncharacterized ABC-type transport system, p... 317 1e-86 SPy1228 [R] COG1744 Uncharacterized ABC-type transport system, p... 237 2e-62 TP0319 [R] COG1744 Uncharacterized ABC-type transport system, pe... 230 3e-60 SPy0163 [R] COG1744 Uncharacterized ABC-type transport system, p... 227 2e-59 VNG0903C [R] COG1744 Uncharacterized ABC-type transport system, ... 193 3e-49 >BS_yufN [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 350 Score = 317 bits (813), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 166/315 (52%), Positives = 224/315 (71%), Gaps = 13/315 (4%) Query: 46 KTDVKVGMVTDVGGVNDKSFNQSAWEALQALQKETGID-----IKYLQSKSNADYEPNLN 100 K V MVTDVGGV+DKSFNQSAWE +QA KE G+ YLQSKS+ADY NLN Sbjct: 27 KNKFSVAMVTDVGGVDDKSFNQSAWEGIQAFGKENGLKKGKNGYDYLQSKSDADYTTNLN 86 Query: 101 QFVKGGYNLTWGIGFDLGDAIKKVATENPNANLAIIDSVVDAPNVESVTFSENEGSFLVG 160 + + ++L +G+G+ + D+I ++A + N N AIID+VVD NV S+TF E EGSFLVG Sbjct: 87 KLARENFDLIYGVGYLMEDSISEIADQRKNTNFAIIDAVVDKDNVASITFKEQEGSFLVG 146 Query: 161 VVAGLTTKTNKVGFIGGMESPVIKRFEVGFKAGVEAVNPKATVKITYAGAYDKPDIGKSL 220 V A L++K+ K+GF+GGMES +IK+FEVGF+AGV+AVNPKA V++ YAG +DK D+GK+ Sbjct: 147 VAAALSSKSGKIGFVGGMESELIKKFEVGFRAGVQAVNPKAVVEVKYAGGFDKADVGKAT 206 Query: 221 AATLYNDGNDIIFPAAGATGNGVFNEAKSRNKAGGAK-VWVIGVDKDQSLE-----FGDD 274 A ++Y G D+I+ +AGATG GVF EAK+ K + VWVIGVDKDQ E D+ Sbjct: 207 AESMYKSGVDVIYHSAGATGTGVFTEAKNLKKEDPKRDVWVIGVDKDQYAEGQVEGTDDN 266 Query: 275 VTLTSMIKRVDEAVKKVSQQVIDGTFKGGTTTVLGLKDNGVGLPETSKANVSADILAKVD 334 VTLTSM+K+VD V+ V+++ DG F GG T GL +GVG+ SK N+S D++ VD Sbjct: 267 VTLTSMVKKVDTVVEDVTKKASDGKFPGGETLTYGLDQDGVGIS-PSKQNLSDDVIKAVD 325 Query: 335 EYTKQIIDGTIKVPS 349 ++ K+IIDG +++P+ Sbjct: 326 KWKKKIIDG-LEIPA 339 >SPy1228 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 350 Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 158/322 (49%), Positives = 203/322 (63%), Gaps = 22/322 (6%) Query: 46 KTDVKVGMVTDVGGVNDKSFNQSAWEALQA------LQKETGIDIKYLQSKSNADYEPNL 99 KTD+KV MVTD GGV+DKSFNQSAWE LQ+ LQK TG D Y QS S ++Y NL Sbjct: 34 KTDLKVAMVTDTGGVDDKSFNQSAWEGLQSWGKEMGLQKGTGFD--YFQSTSESEYATNL 91 Query: 100 NQFVKGGYNLTWGIGFDLGDAIKKVATENPNANLAIIDSVVDAP-NVESVTFSENEGSFL 158 + V GGY L +GIGF L DAI K A +N IID +++ NV SVTF+++E ++L Sbjct: 92 DTAVSGGYQLIYGIGFALKDAIAKAAGDNEGVKFVIIDDIIEGKDNVASVTFADHEAAYL 151 Query: 159 VGVVAGLTTKTNKVGFIGGMESPVIKRFEVGFKAGVEAVNPKATVKITYAGAYDKPDIGK 218 G+ A TTKT VGF+GGME VI RFE GF+AGV++V+ VK+ YAG++ GK Sbjct: 152 AGIAAAKTTKTKTVGFVGGMEGTVITRFEKGFEAGVKSVDDTIQVKVDYAGSFGDAAKGK 211 Query: 219 SLAATLYNDGNDIIFPAAGATGNGVFNEAKSRN--KAGGAKVWVIGVDKDQSLEFG---- 272 ++AA Y G D+I+ AAG TG GVFNEAK+ N ++ KVWVIGVD+DQ E Sbjct: 212 TIAAAQYAAGADVIYQAAGGTGAGVFNEAKAINEKRSEADKVWVIGVDRDQKDEGKYTSK 271 Query: 273 ----DDVTLTSMIKRVDEAVKKVSQQVIDGTFKGGTTTVLGLKDNGVGLPETSKANVSAD 328 + L S IK V +AV+ +++QV D F GG TTV GLKD GV E + NVS + Sbjct: 272 DGKEANFVLASSIKEVGKAVQLINKQVADKKFPGGKTTVYGLKDGGV---EIATTNVSKE 328 Query: 329 ILAKVDEYTKQIIDGTIKVPSE 350 + + E +I G IKVP + Sbjct: 329 AVKAIKEAKAKIKSGDIKVPEK 350 >TP0319 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 353 Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 129/309 (41%), Positives = 185/309 (59%), Gaps = 10/309 (3%) Query: 48 DVKVGMVTDVGGVNDKSFNQSAWEALQALQKETGIDIKYLQSKSNADYEPNLNQFVKGGY 107 D VGMVTD G ++DKSFNQ WE + +E KY+ + ++A+Y P+L+ F Sbjct: 39 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENM 98 Query: 108 NLTWGIGFDLGDAIKKVATENPNANLAIIDSVV-DAPNVESVTFSENEGSFLVGVVAGLT 166 L G L +A+ + + P +ID+VV D NV S F +NEGSFLVGV A L Sbjct: 99 GLVVACGSFLVEAVIETSARFPKQKFLVIDAVVQDRDNVVSAVFGQNEGSFLVGVAAALK 158 Query: 167 TKT---NKVGFIGGMESPVIKRFEVGFKAGVEAVNPKATVKITYAGAYDKPDIGKSLAAT 223 K + VGFI GME ++ FE GF+AGV+AV+P V + A + P G++LAA Sbjct: 159 AKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAK 218 Query: 224 LYNDGNDIIFPAAGATGNGVFNEAKSRNKAGGAKVWVIGVDKDQSLEFGDD----VTLTS 279 LY+ G ++IF AG TGNGV EA+ R + G VWVIGVD+DQ ++ D V LTS Sbjct: 219 LYDSGVNVIFQVAGGTGNGVIKEARDR-RLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTS 277 Query: 280 MIKRVDEAVKKVSQQVIDGTFKGGTTTVLGLKDNGVGLPETSKANVSADILAKVDEYTKQ 339 M+KR D A +++S+ DG+F GG + + GL+D VG+PE + N+S+ ++ K+ + ++ Sbjct: 278 MVKRADVAAERISKMAYDGSFPGGQSIMFGLEDKAVGIPEENP-NLSSAVMEKIRSFEEK 336 Query: 340 IIDGTIKVP 348 I+ I VP Sbjct: 337 IVSKEIVVP 345 >SPy0163 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 342 Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/316 (45%), Positives = 200/316 (63%), Gaps = 20/316 (6%) Query: 49 VKVGMVTDVGGVNDKSFNQSAWEALQALQKETGID----IKYLQSKSNADYEPNLNQFVK 104 +K+ M+T+ G++DKSFNQSAWE LQA KE ++ Y QS + +++ NL V Sbjct: 29 LKIAMITNQTGIDDKSFNQSAWEGLQAWGKENKLEKGKGYDYFQSANESEFTTNLESAVT 88 Query: 105 GGYNLTWGIGFDLGDAIKKVATENPNANLAIIDSVVDAP-NVESVTFSENEGSFLVGVVA 163 GYNL +GIGF L DA++KVA NP+ + AI+D V+ NV S+TFS++E ++L GV A Sbjct: 89 NGYNLVFGIGFPLHDAVEKVAANNPDNHFAIVDDVIKGQKNVASITFSDHEAAYLAGVAA 148 Query: 164 GLTTKTNKVGFIGGMESPVIKRFEVGFKAGVEAVNPKATVKITYAGAYDKPDIGKSLAAT 223 TTKT +VGF+GGME V+KRFE GF+AGV++V+ V++ YAG++ GK++AA Sbjct: 149 AKTTKTKQVGFVGGMEGDVVKRFEKGFEAGVKSVDDTIKVRVAYAGSFADAAKGKTIAAA 208 Query: 224 LYNDGNDIIFPAAGATGNGVFNEAKSRNKAGGA--KVWVIGVDKDQSLEFGDDVT----- 276 Y +G D+I+ AAG TG GVF+EAKS N+ KVWVIGVD+DQS E G T Sbjct: 209 QYAEGADVIYHAAGGTGAGVFSEAKSINEKRKEEDKVWVIGVDRDQS-EDGKYTTKDGKS 267 Query: 277 ----LTSMIKRVDEAVKKVSQQVIDGTFKGGTTTVLGLKDNGVGLPETSKANVSADILAK 332 LTS IK V +A+ KV+ + + F GG T GLK+ GV L + ++ D Sbjct: 268 ANFVLTSSIKEVGKALVKVAVKTSEDQFPGGQITTFGLKEGGVSLTTDA---LTQDTKKA 324 Query: 333 VDEYTKQIIDGTIKVP 348 ++ K II+GTI VP Sbjct: 325 IEAAKKAIIEGTITVP 340 >VNG0903C [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 349 Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/319 (38%), Positives = 180/319 (56%), Gaps = 24/319 (7%) Query: 50 KVGMVTDVGGVNDKSFNQSAWEALQALQKETGIDIKYLQSKSNADYEPNLNQFVK-GGYN 108 KVG V GG+ D SFN A + L+ +KE I + Q ++N+++ + Q+ + G ++ Sbjct: 36 KVGTVYGTGGLGDGSFNDQAKQGLERAKKELDITYEESQPENNSEFATDQQQYAQDGSFD 95 Query: 109 LTWGIGFDLGDAIKKVATENPNANLAIIDSVVDAPNVESVTFSENEGSFLVGVVAGLTTK 168 L +G+ DA+ A + P+ A++D VD NV S F E GS+LVG +AGL T+ Sbjct: 96 LVNCVGYAQKDALATNAADFPDQRWALVDETVDQDNVASYRFREEAGSYLVGELAGLLTQ 155 Query: 169 ---------TNK----VGFIGGMESPVIKRFEVGFKAGVEAVNPKATVKITYAGAYDKPD 215 TN VGF+GG+E+P+IK+FE GF AGV V+ V +Y G+++ P Sbjct: 156 REFSAGSGATNPDAATVGFVGGIETPLIKKFEAGFTAGVNDVSEDIDVLSSYVGSFNDPS 215 Query: 216 IGKSLAATLYNDGNDIIFPAAGATGNGVFNEAKSRNKAGGAKVWVIGVDKDQSLEFGD-- 273 G+S A +++N G DII+ A+ ATG+GVF A+ + + IGVD+DQS+ D Sbjct: 216 AGQSQARSMFNSGADIIYHASAATGDGVFRAAQDIGR------FAIGVDRDQSVTKSDFA 269 Query: 274 DVTLTSMIKRVDEAVKKVSQQVIDGTFKGGTTTVLGLKDNGV--GLPETSKANVSADILA 331 DV L SM+KRVD AV V +G F GG TT LGL+D+GV + A + + Sbjct: 270 DVVLASMVKRVDTAVYNAINAVANGNFAGGETTRLGLEDDGVVAVYGDQLGAEIPQSVKD 329 Query: 332 KVDEYTKQIIDGTIKVPSE 350 V + ++I G I VP+E Sbjct: 330 AVSKSRTELIAGDIDVPTE 348 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,948,001 Number of extensions: 1015044 Number of successful extensions: 2618 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 2543 Number of HSP's successfully gapped: 35 Length of query: 350 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 243 Effective length of database: 26,037,693 Effective search space: 6327159399 Effective search space used: 6327159399 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 116 (49.3 bits)