BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0053.p
         (165 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all4623 [J] COG0290 Translation initiation factor 3 (IF-3)            167   5e-42
AGc4363 [S] COG3791 Uncharacterized conserved protein                 163   1e-40
all2368 [J] COG0290 Translation initiation factor 3 (IF-3)             90   2e-18

>all4623 [J] COG0290 Translation initiation factor 3 (IF-3)
          Length = 204

 Score =  167 bits (424), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 117/162 (72%)

Query: 2   INDEIRAKEVRLVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKFR 61
           IN+ IR  ++R++  +G Q+GI   +EALQ+A +  LDLV ++ +A PPVCRIMDYGK++
Sbjct: 42  INERIRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGKYK 101

Query: 62  YETQKKEKEARKNQKIVDIKEVWFRANIEEHDYQTKFRNVIKFLGEGDKVKCSVRFRGRE 121
           +E +KK +EARK Q   D+KEV  R  IEEHDY  + +   +FL +GDKVK +V FRGRE
Sbjct: 102 FEQEKKAREARKKQHTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGRE 161

Query: 122 ITHASIGQKILERVKSEVEDISVVERQPKLEGRSMIMILAPK 163
           I H+ + + +L+R+ +++E    V++ PK EGR+M+M+++PK
Sbjct: 162 IQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPK 203


>AGc4363 [S] COG3791 Uncharacterized conserved protein
          Length = 140

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 103/139 (74%)

Query: 25  PIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKFRYETQKKEKEARKNQKIVDIKEVW 84
           P  +AL+MA +  LDLV ++P A+PPVC+I+D GK +Y TQKK  EARK QKIV++KE+ 
Sbjct: 2   PTDQALKMAEEAGLDLVEISPNAEPPVCKILDLGKLKYSTQKKAAEARKKQKIVEVKEIK 61

Query: 85  FRANIEEHDYQTKFRNVIKFLGEGDKVKCSVRFRGREITHASIGQKILERVKSEVEDISV 144
            R NI+ HDY  K + + +F  EGDKVK +++FRGRE+ H  +G K+L +VK + + I+ 
Sbjct: 62  MRPNIDTHDYDVKMKAMNRFFDEGDKVKVTLKFRGREMAHQELGMKLLLQVKEDTQAIAK 121

Query: 145 VERQPKLEGRSMIMILAPK 163
           VE +PKLEGR M+M+LAP+
Sbjct: 122 VEAEPKLEGRQMMMVLAPR 140


>all2368 [J] COG0290 Translation initiation factor 3 (IF-3)
          Length = 144

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 86/150 (57%), Gaps = 7/150 (4%)

Query: 13  LVGAEGEQIGIKPIREALQMAIDLNLDLVNVAPQAKPPVCRIMDYGKFRYETQKKEKEAR 72
           ++  E    G+    EALQ+A  + LDLV V+     PV +I++YGK +Y+ +K++ ++ 
Sbjct: 1   MIDHENNNRGLIDTYEALQLAQSVELDLVVVSQSKDTPVAKILNYGKLQYQKKKRQGQSA 60

Query: 73  KNQKIVDIKEVWFRANIEEHDYQTKFRNVIKFLGEGDKVKCSVRFRGREITHASIGQKIL 132
           +      +KEV FR N+   DY  +    +++L +GD VK ++R RGRE  +     ++L
Sbjct: 61  RP----TVKEVRFRPNVGAADYNLRIEQALQWLSKGDSVKFAIRLRGRENQYREQAGQML 116

Query: 133 ERVKSEVEDISVVERQPKLEGRSMIMILAP 162
           ER+   V D+S V +   L+ RS+I+ + P
Sbjct: 117 ERI---VTDLSQVGKVQSLDKRSLIVQIMP 143


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,464,473
Number of extensions: 426190
Number of successful extensions: 2462
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2461
Number of HSP's successfully gapped: 3
Length of query: 165
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 67
Effective length of database: 27,075,699
Effective search space: 1814071833
Effective search space used: 1814071833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)