BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0040.p
         (185 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SA0426 [KR] COG0454 Histone acetyltransferase HPA2 and related a...    87   1e-17
PM0530 [KR] COG0454 Histone acetyltransferase HPA2 and related a...    79   5e-15
BS_ybbJ [KR] COG0454 Histone acetyltransferase HPA2 and related ...    64   1e-10

>SA0426 [KR] COG0454 Histone acetyltransferase HPA2 and related
           acetyltransferases
          Length = 161

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 10  MNSAVQISLRLYEEKYKEDLLAFELPPEQAEFTGLPEETLSEAVANPGKTAVVIVQEEQA 69
           M +   I LR Y  +    L AF+L     +F   PEE ++ A+++  +  +V++   Q 
Sbjct: 1   MTNNDTIMLRHYVPQDYSMLEAFQLSESDLKFVKTPEENITAAMSDNERYPIVVMDGRQC 60

Query: 70  VGFFVLHRGEGIADFYPNTTGAILLRAFLINYASQGQGIAKAALVVLPDFISTHFPWVRE 129
           V FF LHRG+G+A F  N   A+  R+F ++   + +GI K  +  L  FI++ F  + E
Sbjct: 61  VAFFTLHRGKGVAPFSDN-QDAVFFRSFSVDQRYRNRGIGKVVMEKLASFITSTFQDINE 119

Query: 130 IVLAVNERNIAAASLYSRAGF 150
           IVL VN  N  A +LY + G+
Sbjct: 120 IVLTVNTDNPHAMALYRQQGY 140


>PM0530 [KR] COG0454 Histone acetyltransferase HPA2 and related
           acetyltransferases
          Length = 163

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 30  LAFELPPEQAEFTGLPEETLSEAVANPGKTAVVIVQEEQAVGFFVLHRGEGIADFYPNTT 89
           L++ L PEQA+FT LP    ++  A     A  I+ +++ VGFFVL +GE     Y +  
Sbjct: 15  LSYSLSPEQAKFTALPSVWFADLNAKKPWKAFSILSDDEPVGFFVLDQGEDRQK-YSDNP 73

Query: 90  GAILLRAFLINYASQGQGIAKAALV--VLPDFISTHFPWVREIVLAVNERNIAAASLYSR 147
            A+LLR+  I+   QG GIAK AL    L   +  +FP   EIVL VN  N  A + Y  
Sbjct: 74  QAVLLRSMSIHPDFQGLGIAKQALSHQRLMSLLLHYFPSSHEIVLGVNHLNQRAYAFYLA 133

Query: 148 AGFLDKGLRRSGGKGPQKVL 167
            GF        G +G Q +L
Sbjct: 134 CGFKHTQRELMGIRGKQYIL 153


>BS_ybbJ [KR] COG0454 Histone acetyltransferase HPA2 and related
           acetyltransferases
          Length = 151

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 6/104 (5%), Positives = 13/104 (12%)

Query: 16  ISLRLYEEKYKEDLLAFELPPEQAEFTGLPEETLSEAVANPGKTAVVIVQEEQAVGFFVL 75
           +            LL          +                   +    +        L
Sbjct: 5   VVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVPLGWEWQGVMFAILTL 64

Query: 76  HRGEGIADFYPNTTGAILLRAFLINYASQGQGIAKAALVVLPDF 119
                   +              +N   Q     +  L      
Sbjct: 65  LAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVLESPLVN 108


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,995,967
Number of extensions: 575361
Number of successful extensions: 1045
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1044
Number of HSP's successfully gapped: 3
Length of query: 185
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 85
Effective length of database: 26,845,031
Effective search space: 2281827635
Effective search space used: 2281827635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)