BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0029.p
         (189 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0482 [K] COG1309 Transcriptional regulator                         105   3e-23
BH0719 [K] COG1309 Transcriptional regulator                           59   3e-09
SPy2177 [K] COG1309 Transcriptional regulator                          56   4e-08

>lin0482 [K] COG1309 Transcriptional regulator
          Length = 186

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 1/169 (0%)

Query: 1   VSNSLLTKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQT 60
           ++ SL+TKKA+A  L  L +H    KIS+  + + CGLNRQTFYYHF D ++LL W Y+ 
Sbjct: 1   MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYEN 60

Query: 61  EALESIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGV 120
           +    +A   +   W     ++   I+ N  F  NT+ S   + L     ++TN L M +
Sbjct: 61  DFFHCLADGITLENWDKHVLKMLESIKENADFYKNTV-SADASILSFCFSKLTNSLFMDL 119

Query: 121 IQELAGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKL 169
            +++     V+  D+ F A F++   +G++I W+  G K+ P+ I  +L
Sbjct: 120 FEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEAPETIANQL 168


>BH0719 [K] COG1309 Transcriptional regulator
          Length = 188

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 7   TKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQTEALESI 66
           T+  L  SL  LM+  PL+ I++K + D   +NR TFY H+ D+++LL  I + E ++ +
Sbjct: 12  TRMLLKESLMKLMQEKPLSNITIKEICDLADINRSTFYSHYTDLYDLLYQI-EDEIIKDL 70

Query: 67  AQYRSYNTWTGG------FYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGV 120
           ++  S   +T           +  YI  N+  C       G       +  + +D    V
Sbjct: 71  SEALSSYNYTKDEEALQMTENLLVYIANNRESCQTLFSEYGDPSFQKKVMMLAHD---HV 127

Query: 121 IQELAGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPK 163
           I+    G     +   +++ +       +V  W++ G+K  PK
Sbjct: 128 IKTPLVGKHTKPDISEYVSLYIVNGSIHIVQSWLKNGLKQSPK 170


>SPy2177 [K] COG1309 Transcriptional regulator
          Length = 177

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 77/159 (48%), Gaps = 4/159 (2%)

Query: 7   TKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQT--EALE 64
           TK+A+  ++  L++    + I+   L    G++R +FY H++D +E++ +  QT    LE
Sbjct: 8   TKQAILKAMVMLLKTESFDDITTVKLSKRAGISRSSFYTHYKDKYEMIDYYQQTFFHKLE 67

Query: 65  SIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGVIQEL 124
            I + + Y      F  +F +++  +   ++ L + G   + A++      LI   +Q+ 
Sbjct: 68  YIFE-KKYQNKEQAFLEVFEFLQREQ-LLSSLLSANGTKEIQAFIINKVRLLITTDLQDK 125

Query: 125 AGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPK 163
               E+   +K + + +   AF G+   W+  G K+ P+
Sbjct: 126 FSTEELSQTEKEYQSIYLAHAFFGVCQSWIAKGKKESPQ 164


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,810,228
Number of extensions: 609841
Number of successful extensions: 825
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 824
Number of HSP's successfully gapped: 3
Length of query: 189
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 89
Effective length of database: 26,845,031
Effective search space: 2389207759
Effective search space used: 2389207759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)