BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0023.p
         (190 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM0823 [K] COG1309 Transcriptional regulator                           49   7e-06

>TM0823 [K] COG1309 Transcriptional regulator
          Length = 190

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%)

Query: 1  MSIDRKALILQAATKSFVQFGYKATTMDQVSKIANVGKGTIYXXXXXXXXXXXXILDKAS 60
          MS + +  IL+AA K+F ++GY   +M+++++ A V K  IY            +  +A 
Sbjct: 1  MSSETRRKILEAARKAFSKYGYDGVSMEEIAREAGVKKALIYYYFPSKDKLFEEVWREAL 60

Query: 61 QELTSVMNRLAAEDNTFIQKLFNLLDSILEF 91
          +EL S +  +  E N++  K+   L S ++F
Sbjct: 61 EELESHLFAVTEETNSYFAKIKKFLKSYVDF 91


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.136    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,796,262
Number of extensions: 336055
Number of successful extensions: 716
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 4
Length of query: 190
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 90
Effective length of database: 26,845,031
Effective search space: 2416052790
Effective search space used: 2416052790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)