BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0014.p
         (101 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3303 [K] COG1733 Predicted transcriptional regulators               129   8e-31
BS_yvaP [K] COG1733 Predicted transcriptional regulators              120   5e-28
CAC0849 [K] COG1733 Predicted transcriptional regulators              110   7e-25
lin1183 [K] COG1733 Predicted transcriptional regulators              107   5e-24
BH0508 [K] COG1733 Predicted transcriptional regulators               103   8e-23

>BH3303 [K] COG1733 Predicted transcriptional regulators
          Length = 107

 Score =  129 bits (325), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 77/92 (83%)

Query: 1   MDIIGRRWTGLIIYQLLQGPQRFSVIEAALPVSGRLLSERLKELEQEGIVLREVFPETPV 60
           + I+ +RWTGLIIYQLL GPQRF  IE++LP+SGR+LSERLK+LEQ GIV R+V+PETPV
Sbjct: 14  ITILSQRWTGLIIYQLLSGPQRFRAIESSLPISGRVLSERLKDLEQHGIVKRDVYPETPV 73

Query: 61  RIQYSLTDKGRALESVIRDLQQWSDSWITAEE 92
           RI+YSLT+KG ALE V++ ++ WS  W+  EE
Sbjct: 74  RIEYSLTEKGLALEPVLKKVEAWSQEWLDVEE 105


>BS_yvaP [K] COG1733 Predicted transcriptional regulators
          Length = 236

 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 73/89 (82%), Gaps = 1/89 (1%)

Query: 1   MDIIGRRWTGLIIYQLLQGPQRFSVIEAALP-VSGRLLSERLKELEQEGIVLREVFPETP 59
           +DI+ +RW  LI++QLL G QRFS IEAALP +SGR+LSERLKELE EG+V R+V PETP
Sbjct: 97  VDILSKRWVALIVFQLLNGSQRFSEIEAALPNLSGRVLSERLKELELEGVVKRDVIPETP 156

Query: 60  VRIQYSLTDKGRALESVIRDLQQWSDSWI 88
           VRI+YSLTDKG+AL  ++ ++ +W+  WI
Sbjct: 157 VRIEYSLTDKGKALAPILGEISKWATEWI 185


>CAC0849 [K] COG1733 Predicted transcriptional regulators
          Length = 102

 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 1   MDIIGRRWTGLIIYQLLQGPQRFSVIEAALP-VSGRLLSERLKELEQEGIVLREVFPETP 59
            +++G+RWTGLII+ LL+G +RFS I+  +P +S R+L+ER +ELE++GIV+R+V+ ETP
Sbjct: 14  FELLGKRWTGLIIHSLLKGAKRFSDIQDIIPNLSARMLTERFRELEKQGIVVRKVYAETP 73

Query: 60  VRIQYSLTDKGRALESVIRDLQQWSDSW 87
           VRI+Y LT+KGR LESV++++Q+W++ W
Sbjct: 74  VRIEYELTEKGRELESVMQEIQKWAEKW 101


>lin1183 [K] COG1733 Predicted transcriptional regulators
          Length = 107

 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 70/87 (80%), Gaps = 1/87 (1%)

Query: 3   IIGRRWTGLIIYQLLQGPQRFSVIEAALP-VSGRLLSERLKELEQEGIVLREVFPETPVR 61
           ++G+RWTGLII  LL GP+RF  + A +P +S R+L+ERLKELE+  I LR+V+PETPVR
Sbjct: 17  LLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELEEMDICLRQVYPETPVR 76

Query: 62  IQYSLTDKGRALESVIRDLQQWSDSWI 88
           I+Y LT+KG+AL+ V+ ++Q W+D W+
Sbjct: 77  IEYELTEKGKALQEVMLEVQCWADKWV 103


>BH0508 [K] COG1733 Predicted transcriptional regulators
          Length = 102

 Score =  103 bits (256), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 1   MDIIGRRWTGLIIYQLLQGPQRFSVIEAALP-VSGRLLSERLKELEQEGIVLREVFPETP 59
           +D++G++WTGLII  LL GP+RF  I+A +P +S R+L+ER+KELEQ  +V+R V+PE P
Sbjct: 14  IDLLGKKWTGLIIRVLLAGPKRFKDIKAQIPGMSDRILTERMKELEQLEVVIRHVYPEKP 73

Query: 60  VRIQYSLTDKGRALESVIRDLQQWSDSW 87
           VRI+Y LT+KG+ L  VI  +QQW + W
Sbjct: 74  VRIEYELTEKGKDLTPVIEAIQQWGEKW 101


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,538,799
Number of extensions: 256984
Number of successful extensions: 842
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 78
Length of query: 101
Length of database: 38,378,431
Length adjustment: 70
Effective length of query: 31
Effective length of database: 30,305,051
Effective search space: 939456581
Effective search space used: 939456581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)