BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0007.p (562 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein 169 2e-41 BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein 168 2e-41 BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 165 2e-40 BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein 157 3e-38 BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein 152 2e-36 >BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 0/366 (0%), Positives = 0/366 (0%), Gaps = 6/366 (1%) Query: 186 AGITLAVLI-VGVGSALLMTRRITHPITQLAAYSNKLAGGDFTQQLEIKGSDEVGQLAES 244 Sbjct: 283 342 Query: 245 FRTMSQQLKEMIGQVLDTSSIVVADSNDLKGRTDILNGMAEQSSLSVXXXXXXXXXXXXX 304 Sbjct: 343 402 Query: 305 XQDNSRAMDEINTGIQHIASAAGEVTEQIIEASEEATGGNDIAQSAVEQMRQVAEASVKS 364 Sbjct: 403 - 461 Query: 365 LEQF-RIMNERSLQIGEVVQGITEITKQIQMLSLNASIEAARAGEHGRGFAVVAGEVRKL 423 Sbjct: 462 521 Query: 424 SEQSKESNEQIREFLLSLQEDMNRSVEEMNHVNAEVASGVGKVAEAGNAFSHLLILIQSI 483 Sbjct: 522 581 Query: 484 NHSIQSVSAATQQISAGTEEVSASVEETAQITSKSRQNADTLAANSERQ---RQELEVHA 540 Sbjct: 582 641 Query: 541 QTVEHL 546 Sbjct: 642 647 >BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 0/417 (0%), Positives = 0/417 (0%), Gaps = 12/417 (2%) Query: 152 KTAYVGVPGTTMVIGASSDVAFVKDKMSSILWTSAGITLAVLIVGVGSALLMTRRITHPI 211 Sbjct: 250 309 Query: 212 TQLAAYSNKLAGGDFTQQLEIKGSDEVGQLAESFRTMSQQLKEMIGQVLDTSSIVVADSN 271 Sbjct: 310 369 Query: 272 DLKGRTDILNGMAEQSSLSVXXXXXXXXXXXXXXQDNSRAMDEINTGIQHIASAAGEVTE 331 Sbjct: 370 429 Query: 332 QIIEASEEATGGNDIAQSAVEQMR------QVAEASVKSLEQFRIMNERSLQIGEVVQGI 385 Sbjct: 430 ------ 483 Query: 386 TEITKQIQMLSLNASIEAARAGEHGRGFAVVAGEVRKLSEQSKESNEQIREFLLSLQEDM 445 Sbjct: 484 543 Query: 446 NRSVEEMNHVNAEVASGVGKVAEAGNAFSHLLILIQSINHSIQSVSAATQQISAGTEEVS 505 Sbjct: 544 603 Query: 506 ASVEETAQITSKSRQNADTLAANSERQRQELEVHAQTVEHLYXXXXXXXXXXXXFKI 562 Sbjct: 604 660 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/362 (31%), Positives = 195/362 (53%), Gaps = 2/362 (0%) Query: 202 LMTRRITHPITQLAAYSNKLAGGDFTQQLEIKGSDEVGQLAESFRTMSQQLKEMIGQVLD 261 L+ R IT P+ QL S +++ GD T+ ++I+ DE+G+L +SF M+ L+ +I + D Sbjct: 300 LIIRSITTPLKQLVGSSKRISEGDLTETIDIRSKDELGELGKSFNNMASSLRSLIHAIQD 359 Query: 262 TSSIVVADSNDLKGRTDILNGMAEQSSLSVXXXXXXXXXXXXXXQDNSRAMDEINTGIQH 321 + V A S +L + E +L++ + + + ++N G+ + Sbjct: 360 SVDNVAASSEELTASAAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLTN 419 Query: 322 IASAAGEVTEQIIEASEEATGGNDIAQSAVEQMRQVAEASVKSLEQF-RIMNERSLQIGE 380 +A A+ +T+ ++++E A+ G + V QM V + SVK EQ R + +S I Sbjct: 420 MAQASEVITDSSVQSTEIASEGGKLVHQTVGQMN-VIDKSVKEAEQVVRGLETKSKDITN 478 Query: 381 VVQGITEITKQIQMLSLNASIEAARAGEHGRGFAVVAGEVRKLSEQSKESNEQIREFLLS 440 +++ I I Q +L+LNA+IEAARAGE+GRGF+VVA EVRKL+ QS +S ++I ++ Sbjct: 479 ILRVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIE 538 Query: 441 LQEDMNRSVEEMNHVNAEVASGVGKVAEAGNAFSHLLILIQSINHSIQSVSAATQQISAG 500 + +++N S+ VN EV +G+ + +F + + I +Q++SA QQ+SA Sbjct: 539 IVKEINTSLGMFQSVNQEVQTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSAS 598 Query: 501 TEEVSASVEETAQITSKSRQNADTLAANSERQRQELEVHAQTVEHLYXXXXXXXXXXXXF 560 +EEVS + E A I+ +S + +AA++E Q +E + + E L F Sbjct: 599 SEEVSGASEHIASISKESSAHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKRF 658 Query: 561 KI 562 KI Sbjct: 659 KI 660 >BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 662 Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 110/370 (29%), Positives = 195/370 (52%), Gaps = 12/370 (3%) Query: 174 VKDKMSSILWTSAGITLAVLIVGVGSALLMTRRITHPITQLAAYSNKLAGGDFTQQLEIK 233 +KD S+L T + +A ++ G L + R IT P+ +L S ++ GD T+ +EI Sbjct: 273 IKDASKSVLTTGMIVLIASIVAGGILILFIVRSITKPLKRLVQSSKTISRGDLTETIEIH 332 Query: 234 GSDEVGQLAESFRTMSQQLKEMIGQVLDTSSIVVADSNDLKGRTDILNGMAEQSSLSVXX 293 DE+G+L ESF M Q L+ +I + ++ + V A S L + E ++++ Sbjct: 333 SKDELGELGESFNEMGQSLRSLISAIQNSVNNVAASSEQLTASAGQTSKATEHITMAIEQ 392 Query: 294 XXXXXXXXXXXXQDNSRAMDEINTGIQHIASAAGEVTEQIIEASEEATGGNDIAQ----- 348 + +S ++ +N G+Q ++ + ++T+ I+++E A G Q Sbjct: 393 FSNGNEEQSRKVESSSHQLNLMNEGLQQVSQTSSDITKASIQSTEIAGTGEKFVQQTGGQ 452 Query: 349 -SAVEQMRQVAEASVKSLEQFRIMNERSLQIGEVVQGITEITKQIQMLSLNASIEAARAG 407 +++ Q Q AEA VK LE +S I +++ I I Q +L+LNA+IEAARAG Sbjct: 453 MNSINQSVQQAEAVVKGLEG------KSKDITSILRVINGIADQTNLLALNAAIEAARAG 506 Query: 408 EHGRGFAVVAGEVRKLSEQSKESNEQIREFLLSLQEDMNRSVEEMNHVNAEVASGVGKVA 467 E GRGF+VVA EVRKL+ QS +S ++I + + + +++ S+ VN EV SG+ Sbjct: 507 ESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQEIVAEIDTSLHMFKEVNQEVQSGLVVTD 566 Query: 468 EAGNAFSHLLILIQSINHSIQSVSAATQQISAGTEEVSASVEETAQITSKSRQNADTLAA 527 +F + + I +Q++++ +Q+S ++ VSA+V A ++ +S + +AA Sbjct: 567 NTKESFQSIFSMTNEIAGKLQTMNSTVEQLSDRSQHVSAAVSGIADVSKESSASIQDIAA 626 Query: 528 NSERQRQELE 537 ++E Q +E Sbjct: 627 SAEEQLASME 636 >BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 359 Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/328 (30%), Positives = 184/328 (56%), Gaps = 3/328 (0%) Query: 205 RRITHPITQLAAYSNKLAGGDFT-QQLEIKGSDEVGQLAESFRTMSQQLKEMIGQVLDTS 263 + IT P+ +L + +A GD T ++++IK DE+GQL ESF M + L+ +I ++L + Sbjct: 1 KMITKPLARLTKVARHVADGDLTTERVKIKNRDEIGQLNESFEAMKENLRGLIQRILQNA 60 Query: 264 SIVVADSNDLKGRTDILNGMAEQSSLSVXXXXXXXXXXXXXXQDNSRAMDEINTGIQHIA 323 V S L + + EQ++ ++ Q + + ++E+N + + Sbjct: 61 DQVAVSSEQLSASAEQTSSATEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMT 120 Query: 324 SAAGEVTEQIIEASEEATGGNDIAQSAVEQMRQVAEASVKSLEQ-FRIMNERSLQIGEVV 382 A ++ A G+ + + VE M+ + E SVK +Q + +++RS I E++ Sbjct: 121 DGAKQIESNANLTLTYANEGDTLVKETVENMQSIDE-SVKGSDQAIQTLSKRSEDIVEIL 179 Query: 383 QGITEITKQIQMLSLNASIEAARAGEHGRGFAVVAGEVRKLSEQSKESNEQIREFLLSLQ 442 I I +Q +L+LNA+IEAARAGEHG+GFAVVA EVRKL+E+S +S ++I + + + Sbjct: 180 DVIQSIAEQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMV 239 Query: 443 EDMNRSVEEMNHVNAEVASGVGKVAEAGNAFSHLLILIQSINHSIQSVSAATQQISAGTE 502 ++ N SVE+M V EV+ G+ A+ F ++ IQ + +++++ T++++ + Sbjct: 240 KETNNSVEKMGLVKEEVSVGLKTAAQTSEKFHSIVASIQGVTSQVEAMNRVTREVAEKST 299 Query: 503 EVSASVEETAQITSKSRQNADTLAANSE 530 EV+ SV+ A + +S + + +++A +E Sbjct: 300 EVATSVQNMASVAEESAEQSSSVSAVAE 327 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.311 0.125 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,110,145 Number of extensions: 1161278 Number of successful extensions: 7493 Number of sequences better than 1.0e-05: 805 Number of HSP's gapped: 5829 Number of HSP's successfully gapped: 808 Length of query: 562 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 450 Effective length of database: 25,461,023 Effective search space: 11457460350 Effective search space used: 11457460350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)