BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0006.p
         (144 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1054_1 [L] COG3666 Transposase and inactivated derivatives           88   5e-18
SA1605 [L] COG3666 Transposase and inactivated derivatives             87   1e-17
BH0682 [L] COG3666 Transposase and inactivated derivatives             81   5e-16
FN1339 [L] COG3666 Transposase and inactivated derivatives             68   5e-12
FN0529 [L] COG3666 Transposase and inactivated derivatives             68   5e-12

>BH1054_1 [L] COG3666 Transposase and inactivated derivatives
          Length = 591

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 66/106 (62%)

Query: 8   QIGTENQFILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENYAYLEKK 67
           QIGT++QFIL Y++H  PTDTRCL PH+E +++    LPKT+IADAGYGSE NY  +  +
Sbjct: 304 QIGTQDQFILFYTVHPNPTDTRCLLPHVEALKESGLPLPKTLIADAGYGSESNYVAMADE 363

Query: 68  EIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAEDHWTCPAGKCI 113
             + ++   ++ +E+ +++         W  +  +D + CP  + +
Sbjct: 364 LFETLIPSHTFRQEQKRSFAKKRFHPYNWRCDETDDVYWCPNQRKV 409


>SA1605 [L] COG3666 Transposase and inactivated derivatives
          Length = 259

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 7   LQIGTENQF--ILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENY-AY 63
           +Q    ++F   L+Y L Q PTDTR L P +  +Q   G LP+ ++ADAGY SE+NY A 
Sbjct: 1   MQFTNSDKFSIFLSYDLFQTPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYDSEQNYMAI 60

Query: 64  LEKKEIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAEDHWTCPAGKCI 113
           ++      ++ YG + K+K++ +K+++   + W Y+   D + CP  K I
Sbjct: 61  IDDFNKTPLITYGMFIKDKTRKFKSDIFNTQNWKYDELNDEFICPNNKRI 110


>BH0682 [L] COG3666 Transposase and inactivated derivatives
          Length = 522

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 65/105 (61%)

Query: 7   LQIGTENQFILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENYAYLEK 66
           +QI TE Q+ LA+ +   PTDTR L P ++K+++   +LP+ ++ADAGYGSE+NY  +  
Sbjct: 292 VQIATEGQYTLAFDVFANPTDTRTLIPFLDKIEEHFFKLPQYIVADAGYGSEQNYEDVMN 351

Query: 67  KEIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAEDHWTCPAGK 111
           +E   ++ Y  Y KEK K +K N      W Y+   D +TCP GK
Sbjct: 352 RECTPLITYNMYRKEKKKRYKNNDFNSANWEYDEETDSFTCPNGK 396


>FN1339 [L] COG3666 Transposase and inactivated derivatives
          Length = 493

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 7   LQIGTENQFILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENYAYLEK 66
           LQIG  +++I +Y +   P DT+ L P +EK +    ++ K V+ADAGY S  NY YLEK
Sbjct: 273 LQIGVISEYIASYEIFHNPADTKTLIPFLEKTKSQNIEI-KNVVADAGYESFPNYEYLEK 331

Query: 67  KEIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAED 103
               + +K   Y K K++ ++ N+ ++E   Y+  E+
Sbjct: 332 NNYVSYIKPIYYEKSKTRKYQKNLNRVENLEYDEKEN 368


>FN0529 [L] COG3666 Transposase and inactivated derivatives
          Length = 493

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 7   LQIGTENQFILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENYAYLEK 66
           LQIG  +++I +Y +   P DT+ L P +EK +    ++ K V+ADAGY S  NY YLEK
Sbjct: 273 LQIGVISEYIASYDIFHNPADTKTLIPFLEKTKSQNIEI-KNVVADAGYESFPNYEYLEK 331

Query: 67  KEIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAED 103
               + +K   Y K K++ ++ N+ ++E   Y+  E+
Sbjct: 332 NNYVSYIKPIYYEKSKTRKYQKNLNRVENLEYDEKEN 368


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.130    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,159,871
Number of extensions: 472994
Number of successful extensions: 800
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 14
Length of query: 144
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 48
Effective length of database: 27,306,367
Effective search space: 1310705616
Effective search space used: 1310705616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)