BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0005.p
         (50 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1054_1 [L] COG3666 Transposase and inactivated derivatives           52   2e-07
BH0765 [L] COG3666 Transposase and inactivated derivatives             47   5e-06

>BH1054_1 [L] COG3666 Transposase and inactivated derivatives
          Length = 591

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 30/33 (90%)

Query: 1   MWLAGRQRPNFRTLNRFRSQRMRNVLETVFTAV 33
           MWLA RQ P+FRT+NRFRS+R++ +++T+F+A+
Sbjct: 93  MWLAARQTPDFRTINRFRSERLKPLMDTLFSAL 125


>BH0765 [L] COG3666 Transposase and inactivated derivatives
          Length = 315

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 30/33 (90%)

Query: 1  MWLAGRQRPNFRTLNRFRSQRMRNVLETVFTAV 33
          MWLA RQ P+FRT++RFRS+R++ +++T+F+A+
Sbjct: 56 MWLAARQTPDFRTIHRFRSERLKPLMDTLFSAL 88


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 2,853,701
Number of extensions: 59232
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 50
Length of database: 38,378,431
Length adjustment: 23
Effective length of query: 27
Effective length of database: 35,725,749
Effective search space: 964595223
Effective search space used: 964595223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)