BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0014.p (236 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM3602 [K] COG2188 Transcriptional regulators 226 3e-59 CAC3502 [K] COG2188 Transcriptional regulators 200 2e-51 lin0957 [K] COG2188 Transcriptional regulators 132 5e-31 BH0419 [K] COG2188 Transcriptional regulators 127 1e-29 BS_yurK [K] COG2188 Transcriptional regulators 124 1e-28 >STM3602 [K] COG2188 Transcriptional regulators Length = 239 Score = 226 bits (575), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 153/234 (65%) Query: 3 DHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSEGY 62 D + PLYKQL+ + ++I G KPG ++PTE ELS QVSRVTVR ALDALT E Sbjct: 6 DSKSAKPLYKQLEAALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRENL 65 Query: 63 LVRIPGKGTFITKDKIQKNVAETIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLGLN 122 L R+ GKGTF++ +K Q+++ + FS+ C+ Q + PG++ IK V E + L +N Sbjct: 66 LTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMN 125 Query: 123 PGDKVINIERIRYADNVPISVEYSRFPSSYSFLLQEDLNDKSLYEILRSKYKVTFGHSRK 182 G+K + IERIRYAD+V +S+E P ++FLL EDLN+ SLYE LR KY + F HSRK Sbjct: 126 DGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWFTHSRK 185 Query: 183 YIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRSKQLILGDKFELIV 236 I + YASF+VA YL + EGYPL+ I+S + G+ S+QLI+GDK V Sbjct: 186 MIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV 239 >CAC3502 [K] COG2188 Transcriptional regulators Length = 237 Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 151/236 (63%), Gaps = 2/236 (0%) Query: 2 LDHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSEG 61 L+++ ++PLYKQL++K+ I G G +LPTE ELS+ VSRVTVR AL L+ G Sbjct: 3 LNNTIATPLYKQLEKKLQQEIDSGKRPAGSRLPTENELSKAYNVSRVTVRKALAELSESG 62 Query: 62 YLVRIPGKGTFITKDKIQKNVAE-TIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLG 120 YL R GKGTF+ + K+++ + +GFS+ C++ N PGAK+IK +EE + D + + Sbjct: 63 YLERKSGKGTFVAEKKLERGITNGVLGFSEMCKMMNAIPGAKIIKIALEEPSEKDIQKMS 122 Query: 121 LNPGDKVINIERIRYADNVPISVEYSRFPSSYSFLLQEDLNDKSLYEILRSKYKVTFGHS 180 LN +KV+ +ER+RYA+ P+ +E ++FP S+SFL +E+L D SLY+IL ++ + HS Sbjct: 123 LNKDEKVLVLERVRYANGKPVLLELNKFPESFSFLFEENLTDASLYDIL-EQHNIILDHS 181 Query: 181 RKYIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRSKQLILGDKFELIV 236 RK + + +A A L I GYPLL I S + + D + +QL +GDKF I+ Sbjct: 182 RKTLDIVFADTKEAKTLGISRGYPLLRINSIIHNADNTITNLCQQLCIGDKFTFII 237 >lin0957 [K] COG2188 Transcriptional regulators Length = 240 Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 2/236 (0%) Query: 1 MLDHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSE 60 M+D P+Y Q+Q +I + DG K G +P E +L+E VSR+TVR A+ L + Sbjct: 1 MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDD 60 Query: 61 GYLVRIPGKGTFITKDKIQKNVAETIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLG 120 L R G GTFI + K+ + + F++ + K P +++ I A+ +QE L Sbjct: 61 NILQRRVGAGTFIAEKKLTERLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQ 120 Query: 121 LNPGDKVINIERIRYADNVPISVEYSRFPSSY-SFLLQEDLNDKSLYEILRSKYKVTFGH 179 L V+ IERIRY D VPI E + P S L +ED+ D SLY+ + K G Sbjct: 121 LPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKEDIMD-SLYKAIELKLGQKIGE 179 Query: 180 SRKYIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRSKQLILGDKFELI 235 + + + S +A YL+++ G P++ +R + DG+ ++ +G +F+ + Sbjct: 180 AEQTMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFV 235 >BH0419 [K] COG2188 Transcriptional regulators Length = 240 Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 128/236 (54%) Query: 1 MLDHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSE 60 M++ + P+Y Q++E+I I G LKPGD L +E E +E VSR+TVR A++ L ++ Sbjct: 1 MINKNSPLPIYYQIEEQIKQQIESGVLKPGDMLKSEREYAEYYDVSRMTVRQAINNLVNQ 60 Query: 61 GYLVRIPGKGTFITKDKIQKNVAETIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLG 120 GY+ + G GT++ + KI++ + F++ R + P ++++K + ATA + L Sbjct: 61 GYIYKKKGSGTYVQEKKIEQALNGLTSFTEDMRKRGMEPSSRLLKFELIPATAKIAKELN 120 Query: 121 LNPGDKVINIERIRYADNVPISVEYSRFPSSYSFLLQEDLNDKSLYEILRSKYKVTFGHS 180 L V I+RIRY D VPI++E + P++ L E++ ++SLY+ + + + + Sbjct: 121 LKENTPVTEIKRIRYGDGVPIAIERNLLPANLVKGLNEEIINQSLYQYIEEELNLRIADA 180 Query: 181 RKYIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRSKQLILGDKFELIV 236 + I AS A L I++G P+L I DG + K D+++ ++ Sbjct: 181 LQVIEASTASKTEADLLEIQKGSPILLIERKTFLADGTVLELVKSAYRADRYKFMI 236 >BS_yurK [K] COG2188 Transcriptional regulators Length = 242 Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 1/224 (0%) Query: 1 MLDHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSE 60 ML++ S+PLY QL++ I D I G P KLPTE EL VSR+TVR A+ L E Sbjct: 1 MLNNGSSTPLYIQLKQIITDDIKKGVYSPTAKLPTENELCTKYNVSRITVRKAILDLVEE 60 Query: 61 GYLVRIPGKGTFITKDKIQKNVAETIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLG 120 GYL+R GKGTF+ K+++ + G+S+ K P V+ I A+ E L Sbjct: 61 GYLIRQQGKGTFVKSPKLKRELIAVNGYSEFMESTGKKPKHHVLSHDIIPASKPIAEKLQ 120 Query: 121 LNPGDKVINIERIRYADNVPISVEYSRFPSSYSFLLQEDLNDK-SLYEILRSKYKVTFGH 179 + P V+ ++RI Y D+ P++ E + +P + + D S+++IL+ +YKV H Sbjct: 121 IQPESPVVELKRILYNDDQPLTFEVTHYPLDLFPGIDTFIADGVSMHDILKQQYKVVPTH 180 Query: 180 SRKYIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRS 223 + K + + YA + + YL+ + G L I T + + Q I+ S Sbjct: 181 NTKLLNVVYAQQEESKYLDCDIGDALFEIDKTAFTSNDQPIYCS 224 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,330,278 Number of extensions: 736433 Number of successful extensions: 1570 Number of sequences better than 1.0e-05: 146 Number of HSP's gapped: 1501 Number of HSP's successfully gapped: 146 Length of query: 236 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 133 Effective length of database: 26,499,029 Effective search space: 3524370857 Effective search space used: 3524370857 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 114 (48.5 bits)