BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0005.p (223 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0065 [K] COG1802 Transcriptional regulators 96 5e-20 BMEII0475 [K] COG1802 Transcriptional regulators 93 3e-19 SMa0062 [K] COG1802 Transcriptional regulators 89 7e-18 ZydfH [K] COG1802 Transcriptional regulators 87 2e-17 ydfH [K] COG1802 Transcriptional regulators 87 2e-17 >SMa0065 [K] COG1802 Transcriptional regulators Length = 230 Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 106/203 (52%), Gaps = 2/203 (0%) Query: 2 SIKAEIMNTLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESYTDIYPKK 61 ++ ++ L+ +I+ L PG +SE ++ ISR P+R+ +LA E + P++ Sbjct: 15 AVGPQVYRILREQIIQAELVPGARISEAEIARSLSISRQPVREAFIKLAEEGLVQVLPQR 74 Query: 62 GNIVSYIDLESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQKEAIGHNDIDS 121 G V+ I SV + ++R +E +I++ ++ + V EL++ + RQK+ + H+D + Sbjct: 75 GTYVTRISTASVMDVRFVREAIEADIVRQVAGEHPAAIVDELREQIARQKQ-VPHDDRAA 133 Query: 122 FLNQDDAFHRALYRLAGREFLWNLIQQSNVHYLRYRRLHMLKTEKLAGIWKEHQSLLELM 181 FL D+ FH L AGR W++I+ R R L + ++ + ++H+ +++ + Sbjct: 134 FLRLDELFHHTLATAAGRAHAWSVIESVKAQMDRVRFLS-VDDLQIGRLIEQHERIVDAI 192 Query: 182 VHKETAKIGPLIHHHLREDIHSL 204 ++ + HLRE + SL Sbjct: 193 AARDVGGAEQALRMHLREILKSL 215 >BMEII0475 [K] COG1802 Transcriptional regulators Length = 261 Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 103/199 (51%) Query: 7 IMNTLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESYTDIYPKKGNIVS 66 I + L+ +I+ + L PGT L+E AL+E++ +SRTP+R+ L +LA + D++P+ G V+ Sbjct: 52 IYHELQQQIIRMELLPGTPLNEKALTEKYGVSRTPVREALIRLAEDRLVDVFPQSGTFVA 111 Query: 67 YIDLESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQKEAIGHNDIDSFLNQD 126 I ++++ + +R LE E + ++ + +L +++ Q + F D Sbjct: 112 RIPVDAIPEAVVIRQALEGETAERAAANSTAAAIEKLDELIHLQTFYARKDKPGPFHETD 171 Query: 127 DAFHRALYRLAGREFLWNLIQQSNVHYLRYRRLHMLKTEKLAGIWKEHQSLLELMVHKET 186 DAFH + +AG +W ++ + R RR+ M ++ + +EH ++ + + ++ Sbjct: 172 DAFHETIAEIAGYPGIWQHLKPVKMQIDRARRMTMPILGRMEQVLREHHAIRDAISARDV 231 Query: 187 AKIGPLIHHHLREDIHSLD 205 + HHL + +D Sbjct: 232 HAAREAMKHHLSAVLPDID 250 >SMa0062 [K] COG1802 Transcriptional regulators Length = 229 Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 1/195 (0%) Query: 10 TLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESYTDIYPKKGNIVSYID 69 TL +I+ L LKP + E AL+ +SRTP+R+ L +L+ E D+ + G +V+ I Sbjct: 16 TLSRKIIGLELKPNEPIGEHALAGLLGVSRTPVREALSRLSAEGLVDLRSRAGVVVAPIR 75 Query: 70 LESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQKEAIGHNDIDSFLNQDDAF 129 +++V ++R LE I+ + + Q + ++ +E Q+ AI ++ D F D+ Sbjct: 76 MDAVRTAQFVREQLELAIVAEAAQQSNRRVLLGIRQAIEEQELAILEDNPDLFFECDERM 135 Query: 130 HRALYRLAGREFLWNLIQQSNVHYLRYRRLHMLKTEKLAGIWKEHQSLLELMVHKETAKI 189 H LAGR+ +W I + H R RRL ++ +L + ++H+ +L+ + + K Sbjct: 136 HALYCSLAGRDGVWAFISDAKKHMDRVRRLS-IQAGQLDQLVEDHRRVLKAVGEGDATKA 194 Query: 190 GPLIHHHLREDIHSL 204 ++ HLR + L Sbjct: 195 QEIMRLHLRRAVVDL 209 >ZydfH [K] COG1802 Transcriptional regulators Length = 228 Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 102/199 (51%), Gaps = 4/199 (2%) Query: 3 IKAEIMNTLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESYTDIYPKKG 62 + +I L+ +I+ + PGT LSE +S RF +SR P+R+ +LA I P++G Sbjct: 13 VNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRG 72 Query: 63 NIVSYIDLESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQKEAIGHNDIDSF 122 + V+ I + V +++R +E + + +S + + ++L+ L +Q+ AI +D F Sbjct: 73 SYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQRIAIERKQLDDF 132 Query: 123 LNQDDAFHRALYRLAGREFLWNLIQ--QSNVHYLRYRRLHMLKTEKLAGIWKEHQSLLEL 180 DD FH+ L ++A + W+ I+ ++ V +RY + ++ + ++H + Sbjct: 133 FELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEM--LLRQHLDIFSA 190 Query: 181 MVHKETAKIGPLIHHHLRE 199 + ++ + + HL+E Sbjct: 191 LQKRDGDAVERAMTQHLQE 209 >ydfH [K] COG1802 Transcriptional regulators Length = 228 Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 102/199 (51%), Gaps = 4/199 (2%) Query: 3 IKAEIMNTLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESYTDIYPKKG 62 + +I L+ +I+ + PGT LSE +S RF +SR P+R+ +LA I P++G Sbjct: 13 VNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRG 72 Query: 63 NIVSYIDLESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQKEAIGHNDIDSF 122 + V+ I + V +++R +E + + +S + + ++L+ L +Q+ AI +D F Sbjct: 73 SYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQRIAIERKQLDDF 132 Query: 123 LNQDDAFHRALYRLAGREFLWNLIQ--QSNVHYLRYRRLHMLKTEKLAGIWKEHQSLLEL 180 DD FH+ L ++A + W+ I+ ++ V +RY + ++ + ++H + Sbjct: 133 FELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEM--LLRQHLDIFSA 190 Query: 181 MVHKETAKIGPLIHHHLRE 199 + ++ + + HL+E Sbjct: 191 LQKRDGDAVERAMTQHLQE 209 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,976,143 Number of extensions: 569180 Number of successful extensions: 1955 Number of sequences better than 1.0e-05: 51 Number of HSP's gapped: 1950 Number of HSP's successfully gapped: 51 Length of query: 223 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 121 Effective length of database: 26,614,363 Effective search space: 3220337923 Effective search space used: 3220337923 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)