BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0015.p (310 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA1747 [V] COG1131 ABC-type multidrug transport system, ATPase c... 124 2e-28 BH0652 [V] COG1131 ABC-type multidrug transport system, ATPase c... 117 2e-26 BH0382 [V] COG1131 ABC-type multidrug transport system, ATPase c... 106 4e-23 STM1028 [R] COG3772 Phage-related lysozyme (muraminidase) 103 5e-22 TM1028 [V] COG1131 ABC-type multidrug transport system, ATPase c... 103 5e-22 >SA1747 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 298 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%) Query: 4 QAIELRNVSKKRRQGKTIGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEGEIR 63 AIEL NV+ Q + ++ +PQG++T +G+NG+GK+T++ +++ L P G IR Sbjct: 2 NAIELSNVNYSSDQF-NLKNISFKVPQGFVTGFIGRNGAGKTTIIRLIMDLYQPQTGVIR 60 Query: 64 WFEHSYADGLPLALRQRIAYVPENPQAEEKYWSAAEAAEFRRHWYPAWDQDFFEALLAKF 123 E A P+ L+ I +V E+ W+ + + +Y WD FE L KF Sbjct: 61 VLEEDMALN-PIELKNSIGFVYSENYFNER-WTTKQLEKMIAPFYRKWDHQVFEFYLEKF 118 Query: 124 EVPEDAKLGKMSKGERRKFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRKYMDES 183 ++P + + S G + K + DEP+SGLDP A ++E +++ + + Sbjct: 119 DLPINKSIKTFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLDPLARNELLEIIQQELIDE 178 Query: 184 GATVVISTHIVEEVRRLADYIVLMHHGQLLGMAEKDSLFGSW 225 T+ +STHI+ ++ ++ADYI+ + G+++ K+ L + Sbjct: 179 NKTIFMSTHIISDLEKIADYIIHLSDGEVILNGSKEQLLQRY 220 >BH0652 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 288 Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 113/215 (52%), Gaps = 9/215 (4%) Query: 2 VQQAIELRNVSKKRRQGKTIGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEGE 61 ++ +EL NV+K + +I ++L + +G++T +G NG+GKST + M++ L PD+GE Sbjct: 1 MENIVELINVTKTFKDF-SINKMDLQVKKGFVTGFIGANGAGKSTTIKMMMNLLKPDDGE 59 Query: 62 IRWFEHSYADGLPLALRQRIAYVPENPQAEEKYWSAAEAAEFRRHWYPA---WDQDFFEA 118 ++ F Y A+++RI +V + ++ + + PA WD F Sbjct: 60 VKLFGMDYTTH-EKAIKERIGFVYDG----NVFFEGLNLKDIKHIVGPAYKRWDDTLFYQ 114 Query: 119 LLAKFEVPEDAKLGKMSKGERRKFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRK 178 + KFE+P + + SKG + K + DEP++GLDP + +++ L++ Sbjct: 115 YVDKFELPLNKAIKTFSKGMQMKASLAIALSHHAELIIMDEPTAGLDPIFRRELLDILQE 174 Query: 179 YMDESGATVVISTHIVEEVRRLADYIVLMHHGQLL 213 M ++ T+ STHI ++ R+ADYI M G L+ Sbjct: 175 LMIDNDRTIFFSTHITTDLDRIADYIAFMQGGNLV 209 >BH0382 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 230 Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 112/211 (53%), Gaps = 9/211 (4%) Query: 6 IELRNVSKKRRQGKTIGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEGEIRWF 65 I + V+KK RQ + +NL L +G I LVG+NGSGKST L ++ L +P +GE+ Sbjct: 2 ISFQQVTKKYRQKAALQEVNLELTRGKIIGLVGENGSGKSTTLKLIAGLIYPTKGEV--- 58 Query: 66 EHSYADGLPLALR--QRIAYVPENPQAEEKYWSAAEAAEFRRHWYPAWDQDFFEALLAKF 123 +G ++ R ++Y+ E + ++++ + EF +P +D +L Sbjct: 59 ---LVNGNKVSRRIASSVSYLSELDEYY-RFYNVEQTIEFYASQFPDFDPKKAYEILTFM 114 Query: 124 EVPEDAKLGKMSKGERRKFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRKYMDES 183 ++ ++KL ++SKG R + +I DEP SGLDP +++++ L ++D Sbjct: 115 KLDPESKLKQLSKGNRGRLKIVLSLARNVPVILMDEPLSGLDPMVRQSIVKGLISFIDLE 174 Query: 184 GATVVISTHIVEEVRRLADYIVLMHHGQLLG 214 V+I+TH V EV + D ++ + G+++G Sbjct: 175 RQLVLITTHEVREVENILDEVIAIKEGKIIG 205 >STM1028 [R] COG3772 Phage-related lysozyme (muraminidase) Length = 150 Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 0/224 (0%), Positives = 0/224 (0%), Gaps = 11/224 (4%) Query: 4 QAIELRNVSKKRRQGKTIGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEGEIR 63 I + ++ + + G +G + + + + R Sbjct: 2 MRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAER 61 Query: 64 WF-EHSYADGLPLALRQRIAYVPENPQAEEKYWSAAEAAEFRRH---WYPAWDQDFFEAL 119 + + + + ++ + A + Sbjct: 62 LLNTGLVGYE--NDVSRLVKVKL----TQGQFDALVSFAYNLGARTLSSSTLLRKLNAGD 115 Query: 120 LAKFEVPEDAKLGKMSKGERRKFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRKY 179 Sbjct: 116 - 174 Query: 180 MDESGATVVISTHIVEEVRRLADYIVLMHHGQLLGMAEKDSLFG 223 Sbjct: 175 218 >TM1028 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 293 Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 4 QAIELRNVSKKRRQGKTIGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEGEIR 63 +E+R+++K + + + + ++ +G I +G NG+GK+T + +LL L FPD G Sbjct: 2 SVVEVRDLTKYYGKSRGVEGVTFSVEEGEIFGFIGPNGAGKTTTIRLLLGLIFPDSGLAE 61 Query: 64 WF-EHSYADGLPLALRQRIAYVPENPQAEEKYWSAAEAAEFRRH---WYPAWDQDFFEAL 119 F + +G +R+ + Y+P E ++ EF R+ +Y D D+ + L Sbjct: 62 IFGKDVLKEG--KEIRKNVGYIP----GEVSFYPEVTVEEFLRYSASFYEKVDWDYVKEL 115 Query: 120 LAKFEVPEDAKLGKMSKGERRKFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRKY 179 F + ++ ++S G ++K I DEP++GLDP E L K Sbjct: 116 CGVFSLDTKKRIKELSMGNKKKVAIVQALMHRPKLLILDEPTNGLDPIVQNTFFEIL-KN 174 Query: 180 MDESGATVVISTHIVEEVRRLADYIVLMHHGQLLGMAEKDSLFG 223 E G TV S+HI+ EV RL D + ++ G+++ + + ++L G Sbjct: 175 EKEKGTTVFFSSHILSEVERLCDRVAMIKDGRIIRVEKVENLKG 218 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,172,834 Number of extensions: 802077 Number of successful extensions: 17012 Number of sequences better than 1.0e-05: 705 Number of HSP's gapped: 16613 Number of HSP's successfully gapped: 715 Length of query: 310 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 204 Effective length of database: 26,153,027 Effective search space: 5335217508 Effective search space used: 5335217508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)