BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0014.p
         (131 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1164 [K] COG1725 Predicted transcriptional regulators               113   9e-26
BH0651 [K] COG1725 Predicted transcriptional regulators                77   7e-15
STM0766 [C] COG3630 Na+-transporting methylmalonyl-CoA/oxaloacet...    75   2e-14
BS_ytrA [K] COG1725 Predicted transcriptional regulators               67   6e-12
BH0419 [K] COG2188 Transcriptional regulators                          65   3e-11

>BH1164 [K] COG1725 Predicted transcriptional regulators
          Length = 135

 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 79/126 (62%)

Query: 1   MWIPIQINENSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQ 60
           M +PI+I +NS  P+YHQIE Q+K+LI+SG + EG  LPSIR  A +  CSVIT RR YQ
Sbjct: 1   MKLPIKIEQNSRSPIYHQIEEQIKALIVSGHLNEGDPLPSIRALAKETACSVITTRRAYQ 60

Query: 61  DLENEGLLRTRQGTGTFVSHVGEGAMEGYKKEAIRKALENAVDVGLSVQCSEAELTELFT 120
           +LE EG +RT QG GTFV+ +G+   E  K   +   L  A++ G     S  +L ++  
Sbjct: 61  NLEQEGYIRTTQGKGTFVAKIGDEIKEQTKFSTVYHTLSMAIETGRRHDYSFEQLLDMVH 120

Query: 121 EIVKHK 126
            I++ +
Sbjct: 121 TIIQQQ 126


>BH0651 [K] COG1725 Predicted transcriptional regulators
          Length = 123

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 3   IPIQINENSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQDL 62
           + I I+ +S EP+Y QI  Q+K+ I+SG + EG  +PS+R+ A DL+ SVIT +R Y++L
Sbjct: 1   MKIIISNSSKEPIYEQITNQIKASILSGELKEGAAIPSMRKLAKDLQVSVITTKRAYEEL 60

Query: 63  ENEGLLRTRQGTGTFVSHVGEGAMEGYKKEAIRKALE----NAVDVG 105
           E  G + +  G G+FV+      M   K +AI + L     N+ ++G
Sbjct: 61  EKAGFIYSIVGKGSFVAEQNLEVMREKKLKAIEEQLSAVIMNSKEIG 107


>STM0766 [C] COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate
           decarboxylase, gamma subunit
          Length = 81

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 0/109 (0%), Positives = 0/109 (0%), Gaps = 2/109 (1%)

Query: 1   MWIPIQINENSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQ 60
           M     +       L       + + +   +     +  ++  F  +             
Sbjct: 1   MNS--SVLLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSAAVNRFFPEPVPVPKAAPAAAP 58

Query: 61  DLENEGLLRTRQGTGTFVSHVGEGAMEGYKKEAIRKALENAVDVGLSVQ 109
                                                            
Sbjct: 59                                                    107


>BS_ytrA [K] COG1725 Predicted transcriptional regulators
          Length = 130

 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 49/75 (65%)

Query: 5  IQINENSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQDLEN 64
          IQI+  S+ P+Y QI  Q+K L + G++  G  LPS+RE A  +  +  TV + Y++LE 
Sbjct: 2  IQIDPRSSTPIYEQIIQQMKELCLKGIMKPGDKLPSVRELATIIIANPNTVSKAYKELER 61

Query: 65 EGLLRTRQGTGTFVS 79
          EG++ T +G GT++S
Sbjct: 62 EGIIETLRGRGTYIS 76


>BH0419 [K] COG2188 Transcriptional regulators
          Length = 240

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 48/72 (66%)

Query: 7  INENSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQDLENEG 66
          IN+NS  P+Y+QIE Q+K  I SGV+  G +L S RE+A     S +TVR+   +L N+G
Sbjct: 2  INKNSPLPIYYQIEEQIKQQIESGVLKPGDMLKSEREYAEYYDVSRMTVRQAINNLVNQG 61

Query: 67 LLRTRQGTGTFV 78
           +  ++G+GT+V
Sbjct: 62 YIYKKKGSGTYV 73


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,189,947
Number of extensions: 391732
Number of successful extensions: 1041
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 1044
Number of HSP's successfully gapped: 66
Length of query: 131
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 37
Effective length of database: 27,537,035
Effective search space: 1018870295
Effective search space used: 1018870295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)