BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0008.p (208 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2613 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, s... 202 3e-52 BS_ctaE [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ... 182 3e-46 BS_qoxC [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ... 143 2e-34 PA1319 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, s... 127 9e-30 mlr6848 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ... 127 1e-29 >BH2613 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 206 Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 99/205 (48%), Positives = 129/205 (62%), Gaps = 1/205 (0%) Query: 4 AHAESAAGNLPHEPEKATLEGRNKVLAFWLFLGGESVXXXXXXXXXXXXRNQTNEGPSAN 63 H +++ G LP PE+ATLEG+NK L FW FLGGE++ R+ T +GP Sbjct: 3 GHVDTSKG-LPSHPERATLEGKNKFLGFWFFLGGETILFATFFGTYLGLRSGTADGPLPQ 61 Query: 64 DLFHLPXXXXXXXXXXXXXXXXXXXIQAMHRGKVAVLRNWLLVTVFLGLCFLVLEIYEFS 123 D+F LP + AM + K ++ W+ +TV LGL FL EIYEF Sbjct: 62 DIFALPLVFIMTMLLLTSSLTSVIAMAAMKKNKFGAMKLWMWITVLLGLGFLGFEIYEFY 121 Query: 124 VYVRHEEFGMTTSAFSSAFYTLVGFHGAHVAFGILWISVLIGQLARKGLTVVTAPKIYVS 183 YV H E G +TSAF+S+FY+LVG HGAHVAFG+ WI L+ + R G+T+ APK YV+ Sbjct: 122 EYVHHYELGFSTSAFASSFYSLVGLHGAHVAFGLSWIITLLIRYNRSGITLTNAPKFYVA 181 Query: 184 AMYWHFIDVVWVFIFTVVYLLGKVG 208 ++YWHFIDVVWVFIFTVVYL+G +G Sbjct: 182 SLYWHFIDVVWVFIFTVVYLMGVLG 206 >BS_ctaE [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 207 Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 117/199 (58%) Query: 10 AGNLPHEPEKATLEGRNKVLAFWLFLGGESVXXXXXXXXXXXXRNQTNEGPSANDLFHLP 69 A P PEK TLEG+NK L FWLFLGGE+V RN P ++F + Sbjct: 9 AETFPASPEKVTLEGKNKFLGFWLFLGGETVLFASLFATFLALRNSNAGDPPTTEMFDVT 68 Query: 70 XXXXXXXXXXXXXXXXXXXIQAMHRGKVAVLRNWLLVTVFLGLCFLVLEIYEFSVYVRHE 129 + M ++ WL +T+ LG FL LEIYEF Y Sbjct: 69 LVFIATMLLLTSSLTSVYAMYHMKNFSFGKMQLWLGITILLGAGFLGLEIYEFKHYTHEF 128 Query: 130 EFGMTTSAFSSAFYTLVGFHGAHVAFGILWISVLIGQLARKGLTVVTAPKIYVSAMYWHF 189 F +T+SA SAFYTLVG HGAHVAFG++WIS L+ + A++GL + TAPK YV+++YWHF Sbjct: 129 GFTITSSALGSAFYTLVGTHGAHVAFGLMWISTLMIRNAKRGLNLYTAPKFYVASLYWHF 188 Query: 190 IDVVWVFIFTVVYLLGKVG 208 IDVVWVFIFTVVYL+G VG Sbjct: 189 IDVVWVFIFTVVYLMGMVG 207 >BS_qoxC [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 204 Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 112/204 (54%), Gaps = 3/204 (1%) Query: 5 HAESAAGNLPHEPEKATLEGRNKVLAFWLFLGGESVXXXXXXXXXXXXRNQTNEGPSAND 64 HAE N P E + T GR +L FW+FLG E V +N+T G ++ Sbjct: 3 HAEHGNSNAPMEYQSET--GRLNILGFWIFLGAEIVLFSTLFATFFVLKNRTAGGVLPDE 60 Query: 65 LFHLPXXXXXXXXXXXXXXXXXXXIQAMHRGKVAVLRNWLLVTVFLGLCFLVLEIYEFSV 124 LF + + M RG + + W ++T+ LG F+ EI EF Sbjct: 61 LFEVNLVMIMTFLLLISSFTCGIAVHEMRRGSLKGVVIWTIITLLLGAGFVGCEINEFVH 120 Query: 125 YVRHEEFGMTTSAFSSAFYTLVGFHGAHVAFGILWISVLIGQLARKGLTVVTAPKIYVSA 184 YV HE ++TSAF S F+ L+G HG HV GI WI+ ++ QL ++GLT T+ KI++S+ Sbjct: 121 YV-HEGAALSTSAFWSGFFVLLGTHGTHVTIGIFWITGILIQLKKRGLTPQTSSKIFISS 179 Query: 185 MYWHFIDVVWVFIFTVVYLLGKVG 208 +YWHF+DVVW+FIFT VYL+G G Sbjct: 180 LYWHFLDVVWIFIFTGVYLMGLGG 203 >PA1319 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 209 Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 1/198 (0%) Query: 10 AGNLPHEPEKATLEGRNKVLAFWLFLGGESVXXXXXXXXXXXXRNQTNEGPSANDLFHLP 69 A + H+ + A G N V FWL+L + V + T GPS D+F LP Sbjct: 13 AHEVGHDHDHAHDSGGNTVFGFWLYLMTDCVLFASVFATYAVLVHHTAGGPSGKDIFELP 72 Query: 70 XXXXXXXXXXXXXXXXXXXIQAMHRGKVAVLRNWLLVTVFLGLCFLVLEIYEFSVYVRHE 129 + + H+G WL VT LG F+ +EI EF ++ E Sbjct: 73 YVLVETAILLVSSCTYGLAMLSAHKGAKGQAIAWLGVTFLLGAAFIGMEINEFH-HLIAE 131 Query: 130 EFGMTTSAFSSAFYTLVGFHGAHVAFGILWISVLIGQLARKGLTVVTAPKIYVSAMYWHF 189 FG + SAF S+F+TLVG HG HV+ G+LW+ VL+ Q+ +GLT ++ +++WHF Sbjct: 132 GFGPSRSAFLSSFFTLVGMHGLHVSAGLLWMLVLMAQIWTRGLTAQNNTRMMCLSLFWHF 191 Query: 190 IDVVWVFIFTVVYLLGKV 207 +D+VW+ +FTVVYL+G + Sbjct: 192 LDIVWICVFTVVYLMGAL 209 >mlr6848 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Length = 208 Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 100/192 (52%), Gaps = 1/192 (0%) Query: 16 EPEKATLEGRNKVLAFWLFLGGESVXXXXXXXXXXXXRNQTNEGPSANDLFHLPXXXXXX 75 E E EG + +L FWL+L + + GP+ DLF L Sbjct: 17 EEEHVHAEGSSTMLGFWLYLMSDCLIFAMLFAAYGVLGANYAAGPAPKDLFDLDLVAVNT 76 Query: 76 XXXXXXXXXXXXXIQAMHRGKVAVLRNWLLVTVFLGLCFLVLEIYEFSVYVRHEEFGMTT 135 + M +G+VA + WL VT GL FL +E+YEF+ ++ HE Sbjct: 77 TMLLLSSITYGFAMLTMDKGRVAATQAWLAVTGLFGLAFLSIELYEFA-HMIHEGATPQR 135 Query: 136 SAFSSAFYTLVGFHGAHVAFGILWISVLIGQLARKGLTVVTAPKIYVSAMYWHFIDVVWV 195 SAF S+F+TLVG HG HV FGI+W+ L+ Q+AR GL ++ +M+WHF+DVVW+ Sbjct: 136 SAFLSSFFTLVGTHGLHVTFGIVWLVTLMTQVARFGLIEANRRRVMCLSMFWHFLDVVWI 195 Query: 196 FIFTVVYLLGKV 207 +FT VYL+G + Sbjct: 196 GVFTFVYLMGML 207 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.140 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,330,166 Number of extensions: 428873 Number of successful extensions: 904 Number of sequences better than 1.0e-05: 33 Number of HSP's gapped: 858 Number of HSP's successfully gapped: 33 Length of query: 208 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 106 Effective length of database: 26,614,363 Effective search space: 2821122478 Effective search space used: 2821122478 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 113 (48.1 bits)