BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0006.p (349 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2615_1 [C] COG1622 Heme/copper-type cytochrome/quinol oxidases... 194 2e-49 BS_ctaC_1 [C] COG1622 Heme/copper-type cytochrome/quinol oxidase... 163 5e-40 SMb21368_1 [C] COG1622 Heme/copper-type cytochrome/quinol oxidas... 110 3e-24 mll9631_1 [C] COG1622 Heme/copper-type cytochrome/quinol oxidase... 97 5e-20 alr0950 [C] COG1622 Heme/copper-type cytochrome/quinol oxidases,... 92 1e-18 >BH2615_1 [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 Length = 236 Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 136/239 (56%), Gaps = 7/239 (2%) Query: 2 MKTWQAGKRLLPMTAALGLILAGC-GREDLSVLRPQGPAAESSFDLMKLSITIMIVVLLI 60 MK W+ R LP++ + L LAGC G +L+ L PQGP AE FD M LS+ +M V ++ Sbjct: 1 MKLWKTALRFLPLSLVV-LFLAGCMGETNLTALDPQGPQAEWLFDNMLLSLYVMAFVSIV 59 Query: 61 VFSIAAYVLVRFRRKPDQREMPEQVEGSFKLEXXXXXXXXXXXXXXXXXXXXXXFAAG-- 118 VF+I +L RFRRKP E+P+QV G+ LE F Sbjct: 60 VFAIFFIILARFRRKPGDDELPKQVHGNTALEITWTVIPIILLTILAVPTITGTFMLADV 119 Query: 119 -NDHSSDKNAIKVKVTGHQYWWEFEYTDYGVTTAQDLVIPAGKDIAFELSTKDVLHSFWV 177 D ++ + + VTGHQ+WW+F+Y D G T D+ IP G+ + FEL DV+HSFWV Sbjct: 120 EPDPEVEEETVTITVTGHQFWWQFDYED-GFTAGNDVYIPVGEKVIFELHASDVMHSFWV 178 Query: 178 PSLSGKMDTNPDGTTNRFSFSAPNEGVYRGKCAELCGPSHGFMEFKVKSVSEAAFEKWV 236 P+L GK+DT P G TN A GVY+GKCAELCG SH M+FKV ++ ++ WV Sbjct: 179 PALGGKVDTIP-GITNHLWLEASEPGVYKGKCAELCGASHALMDFKVIALERDDYDAWV 236 >BS_ctaC_1 [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 Length = 251 Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 127/230 (55%), Gaps = 12/230 (5%) Query: 23 AGCGREDLSVLRPQGPAAESSFDLMKLSITIMIVVLLIVFSIAAYVLVRFRR-KPDQREM 81 +GCG+ LS L+P G A+ +DL LS IM+VV+ +V I YV+VRFRR + + + Sbjct: 19 SGCGKPFLSTLKPAGEVADKQYDLTVLSTLIMVVVVAVVSVIFFYVIVRFRRSRVGENTI 78 Query: 82 PEQVEGSFKLEXXXXXXXXXXXXXXXXXXXXXXFAAGNDHSSDK------NAIKVKVTGH 135 P+QVEG+ LE + DK +A+ V V + Sbjct: 79 PKQVEGNKFLEITWTVIPILLLIILVIPVVLYTLELADTSPMDKKGRKAEDALVVNVRAN 138 Query: 136 QYWWEFEYTDYGVTTAQDLVIPAGKDIAFELSTKDVLHSFWVPSLSGKMDTNPDGTTNRF 195 YWWEFEY DYG+ T+Q+L++P + + F L DV HSFW+PS+ GK+DTN D F Sbjct: 139 LYWWEFEYPDYGIITSQELIVPTDQRVYFNLKASDVKHSFWIPSVGGKLDTNTDNENKFF 198 Query: 196 -SFSAPNEG----VYRGKCAELCGPSHGFMEFKVKSVSEAAFEKWVNSMK 240 +F + ++ GKCAELCGPSH M+FKVK++S F+ W MK Sbjct: 199 LTFDSKRSKEAGDMFFGKCAELCGPSHALMDFKVKTMSAKEFQGWTKEMK 248 >SMb21368_1 [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 Length = 238 Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 4/122 (3%) Query: 118 GNDHSSDKNAIKVKVTGHQYWWEFEYTDYG---VTTAQDLVIPAGKDIAFELSTKDVLHS 174 G + + A++++V G ++WW Y D + +A ++ +P G+ + EL++ DV+HS Sbjct: 103 GTTEARSQGALRIEVVGERWWWRVTYVDEAGRRIESANEIRLPVGRPVELELTSADVIHS 162 Query: 175 FWVPSLSGKMDTNPDGTTNRFSFSAPNEGVYRGKCAELCGPSHGFMEFKVKSVSEAAFEK 234 FWVP L+GK+D P G TN + A G+ RG+CAE CG H FM F V ++ E F Sbjct: 163 FWVPRLAGKLDMIP-GHTNTLTLQATKAGISRGQCAEYCGGPHAFMSFYVIAMPEDQFSS 221 Query: 235 WV 236 W+ Sbjct: 222 WL 223 >mll9631_1 [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 Length = 216 Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 91/210 (43%), Gaps = 11/210 (5%) Query: 19 GLILAGCGREDLSVLRPQGPAAESSFDLMKLSITIMIVVLLIVFSIAAYVLVRFRRKPDQ 78 G++++GC S L P G A L+ + + V+ L+V + A L R RR + Sbjct: 12 GVLVSGCSGSQ-SALNPYGAPAVHVEHLIVGIVVLSGVIWLLVMVMLALALRRGRRAETE 70 Query: 79 REMPEQVEGSFKLEXXXXXXXXXXXXXXXXXXXXXXFAAGNDHSSDKNAIKVKVTGHQYW 138 + E +L + + A+ + V Q+W Sbjct: 71 GQTSEG-----RLTMTVSAAVAVTVAIIAGMTIASFYTTRSMGVPQSAALTITVRAQQWW 125 Query: 139 WEFEYTDYGVT----TAQDLVIPAGKDIAFELSTKDVLHSFWVPSLSGKMDTNPDGTTNR 194 W+ Y T TA ++ IP G+D+ +L + DV+HSFWVPSL+GK D P G N Sbjct: 126 WQVIYAGSDGTPTFQTANEIHIPVGQDVRLQLESTDVIHSFWVPSLAGKQDLVP-GRPND 184 Query: 195 FSFSAPNEGVYRGKCAELCGPSHGFMEFKV 224 A G+YRG+CAE CG H M V Sbjct: 185 LLLRAEKPGIYRGQCAEFCGLQHSHMAVMV 214 >alr0950 [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 Length = 359 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 9/112 (8%), Positives = 17/112 (15%), Gaps = 2/112 (1%) Query: 130 VKVTGHQYWWEFEYTDYGVTTAQDLVIPAGKDIAFELSTKDVLHSFWVPSLSGKMDTNPD 189 + + + ++ S V + Sbjct: 204 HFDWVRPGIILYGVSPLEDRSTG-ADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVS- 261 Query: 190 GTTNRFSFSAPNEGVYRGKCAELCGPSHGFMEFKVKSVSEAAFEKWVNSMKA 241 R A G + A P A V+ Sbjct: 262 ERDTRLGVVAMGYGDGYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQ 313 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 25,714,767 Number of extensions: 972184 Number of successful extensions: 3142 Number of sequences better than 1.0e-05: 36 Number of HSP's gapped: 3096 Number of HSP's successfully gapped: 36 Length of query: 349 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 242 Effective length of database: 26,037,693 Effective search space: 6301121706 Effective search space used: 6301121706 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)