BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0220.0005.p (326 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP0090 [G] COG4209 ABC-type polysaccharide transport system, per... 216 6e-56 BH0794 [G] COG4209 ABC-type polysaccharide transport system, per... 182 5e-46 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 168 1e-41 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 159 6e-39 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 146 4e-35 >SP0090 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 121/314 (38%), Positives = 179/314 (57%), Gaps = 6/314 (1%) Query: 18 RTARAKSFRKSLKKDSTLYLLALPGIVILILFAYLPMSGLILVFKNYN-----FNDGIFG 72 R K F K+L+ + L+ LPG + LILF Y+P+ G ++ FK+Y+ F D I Sbjct: 7 REEIMKKFSKTLRDNWIFLLMVLPGALWLILFFYIPVFGNVVAFKDYHMTSNGFIDSIIN 66 Query: 73 SPWAGXXXXXXXXXXMEDSLRATRNTVMLNALYMLTGTFFSVAIAIILNELRSKWFIKIT 132 S W G D+ TRNTV+ N ++ G SV IAIIL+ELRSK +KI Sbjct: 67 SKWVGLDNFRFLFSS-RDAFIITRNTVLYNLGFIFLGLVVSVGIAIILSELRSKRMVKIF 125 Query: 133 QSVMFFPYFISWIIIGAILFSLLDYDKGIMNQLLQTLGISQVDWYSSPWLFVIILVLANI 192 Q+ M FPYF+SW+II + L+ DKG+ N LL++LG+ +V++Y+ ++ +L+ I Sbjct: 126 QTSMLFPYFLSWVIISFFTDAFLNIDKGVFNHLLESLGLKEVNFYADLGIWPYLLLFLGI 185 Query: 193 WKSAGYGAIIYYAVLQGIDTSYYEAAKIDGASRWQIITRITVPMLIPSXXXXXXXXXXXX 252 WK GY +++YYA + GID +YYEAA +DGAS+WQ I +T+P L P Sbjct: 186 WKGFGYSSVMYYATIMGIDPTYYEAATVDGASKWQRIRNVTIPQLTPLVTVLTILAVGNI 245 Query: 253 XXXDLSMIMGVTFLNPLLLPTTDIIDVYVYRTAIRSGEFGFASAITLYQSVFGFLLVLVA 312 D + + L T+++DVYV+ ++ + G A+A LYQSV G +LV+++ Sbjct: 246 FRADFGLFYQIPHNAGQLYNVTNVLDVYVFNGLTQTADIGMAAAAGLYQSVVGLILVILS 305 Query: 313 NKLAGWYDKDSKLF 326 N LA D +S LF Sbjct: 306 NLLARRVDPNSALF 319 >BH0794 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 312 Score = 182 bits (463), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 104/305 (34%), Positives = 172/305 (56%), Gaps = 6/305 (1%) Query: 27 KSLKKDSTLYLLALPGIVILILFAYLPMSGLILVFKNYNFN-DGIFGS----PWAGXXXX 81 K++ + L+ LPG++ L++ Y+PM G I+ FK++ F+ DG F S W G Sbjct: 9 KNIYDNRIWLLMVLPGLIWLLVLKYIPMFGQIIAFKDFRFHPDGFFASLYHSEWVGLENF 68 Query: 82 XXXXXXMEDSLRATRNTVMLNALYMLTGTFFSVAIAIILNELRSKWFIKITQSVMFFPYF 141 D+ TRNTV+ N ++++ G +VA+AII++EL ++ KI Q+ M FP+F Sbjct: 69 QFLFST-NDAFIITRNTVLYNVVFIVLGLVLAVAVAIIISELTNQKLAKIYQTGMLFPHF 127 Query: 142 ISWIIIGAILFSLLDYDKGIMNQLLQTLGISQVDWYSSPWLFVIILVLANIWKSAGYGAI 201 +SW+++ +F+ L D+G+ N +L + I V WY+ P + ++ + WK G+ +I Sbjct: 128 LSWVVVSYFVFTFLSIDRGLFNTILSAINIDPVAWYNEPGYWPYFIITISQWKGVGFSSI 187 Query: 202 IYYAVLQGIDTSYYEAAKIDGASRWQIITRITVPMLIPSXXXXXXXXXXXXXXXDLSMIM 261 +Y A + ID +YYEAA IDGAS+WQ I +T+PM++P D + Sbjct: 188 VYLAAIVAIDRTYYEAAIIDGASKWQQIRHVTIPMIMPLIIILTILNIGSIFSADFGLFY 247 Query: 262 GVTFLNPLLLPTTDIIDVYVYRTAIRSGEFGFASAITLYQSVFGFLLVLVANKLAGWYDK 321 V + L T++ID YVYR + G+ G ++A LYQ+ GF+L+L+ N + D+ Sbjct: 248 QVPRDSGPLYSVTNVIDTYVYRGLMTMGDIGMSTAAGLYQATVGFVLILITNYIVRKIDE 307 Query: 322 DSKLF 326 ++ LF Sbjct: 308 ENALF 312 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 167/305 (54%), Gaps = 10/305 (3%) Query: 19 TARAKSFRKSLKKDS-------TLYLLALPGIVILILFAYLPMSGLILVFKNYNFNDGIF 71 T+ AK+ + LKK L++L +P +V+ ++F Y PM G+++ F++Y G Sbjct: 7 TSNAKTVERKLKKQKWNFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFT 66 Query: 72 GSPWAGXXXXXXXXXXMEDSLRATRNTVMLNALYMLTGTFFSVAIAIILNELRSKWFIKI 131 GS W G + + + NT++++ L M+ G + +A++LNE+ + Sbjct: 67 GSEWVGLQHFITMFEY-DYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRT 125 Query: 132 TQSVMFFPYFISWIIIGAILFSLLDYDKGIMNQLLQTLGISQVDWYSSPWLFVIILVLAN 191 Q++++ PYF+SW+I+G IL +L D GI+NQ L GI + + S F +V+++ Sbjct: 126 VQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGIDPIFFLGSNDWFRTTVVISD 185 Query: 192 IWKSAGYGAIIYYAVLQGIDTSYYEAAKIDGASRWQIITRITVPMLIPSXXXXXXXXXXX 251 +WK G+ I++ A + ++ + YEAA +DGA+RW+ IT+P ++P Sbjct: 186 LWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGN 245 Query: 252 XXXXDLSMIMGVTFLNPLLLPTTDIIDVYVYRTAIRSGEFGFASAITLYQSVFGFLLVLV 311 I + NPL+ T DIID YVYR ++ +G+F + +A+ L++S+ +L+++ Sbjct: 246 ILNAGFDQIFNL--YNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIII 303 Query: 312 ANKLA 316 +LA Sbjct: 304 GYRLA 308 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 159/305 (52%), Gaps = 17/305 (5%) Query: 17 IRTARAKSFRKSLKKDSTLYLLALPGIVILILFAYLPMSGLILVFKNYNFNDGIFGSPWA 76 IR R K +LK+ LYL++LP + +++F Y P+ G + F+N+ F W Sbjct: 12 IRVQRRKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWV 71 Query: 77 GXXXXXXXXXXMEDSLRATRNTVMLNALYMLTGTFFSVAIAIILNELRSKWFIKITQSVM 136 G L RNT+ ++ + ++ G + A++LNE+R F + Q+V Sbjct: 72 GLQHFIELFQDNRFYL-VLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVS 130 Query: 137 FFPYFISWIIIGAILFSLLDYDKGIMNQLLQTLGI--SQVDWYSSPWLFVIILVLANIWK 194 + P+F+SW+++ I+ +L D GI+NQLL G V + + F +I+ L+++WK Sbjct: 131 YLPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWK 190 Query: 195 SAGYGAIIYYAVLQGIDTSYYEAAKIDGASRWQIITRITVPMLIPSXXXXXXXXXXXXXX 254 G+ +II+ A + GID YEAAK+DGASRW+ I IT+P + P+ Sbjct: 191 EMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPT--------ILVILI 242 Query: 255 XDLSMIMGVTFL------NPLLLPTTDIIDVYVYRTAIRSGEFGFASAITLYQSVFGFLL 308 + +M + F NPL++ ++++D+Y + G + + +AI ++ SV +L Sbjct: 243 LSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIIL 302 Query: 309 VLVAN 313 + +AN Sbjct: 303 LFLAN 307 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 99/319 (31%), Positives = 171/319 (53%), Gaps = 5/319 (1%) Query: 4 EATPETQGRLSPGIRTARAKSFRKSLKKDSTLYLLALPGIVILILFAYLPMSGLILVFKN 63 E P+ R +P + + S+ +LK+D LYLL +PG++ ++F YLPM G+++ FK+ Sbjct: 2 ETVPKK--RDAPVLTAGKGISWMAALKRDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKD 59 Query: 64 YNFNDGIFGSPWAGXXXXXXXXXXMEDSLRATRNTVMLNALYMLTGTFFSVAIAIILNEL 123 Y+ G + S W G D R RNT+ML +L +L + +A++LNE+ Sbjct: 60 YSPYLGFWKSEWVGFDYFKDFFMN-PDFFRLLRNTLMLASLDLLFAFPAPLILALLLNEV 118 Query: 124 RSKWFIKITQSVMFFPYFISWIIIGAILFSLLDYDKGIMNQLLQTLGISQVDWYSSPWLF 183 R + + Q+ ++ P+F+SW I+ +I F D G++N+L+ +L Q+ + S F Sbjct: 119 RKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIMSLTGEQISFLSDADWF 178 Query: 184 VIILVLANIWKSAGYGAIIYYAVLQGIDTSYYEAAKIDGASRWQIITRITVPMLIPSXXX 243 ++V+ +IWK G+G I++ A L +D YEAA +DGA R++ + IT+P + + Sbjct: 179 RPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFRRMWHITLPAIRSTIIV 238 Query: 244 XXXXXXXXXXXXDLSMIMGVTFLNPLLLPTTDIIDVYVYRTAIRSGEFGFASAITLYQSV 303 + +T N L DI D YVY I G + +++A+ L++SV Sbjct: 239 LLILRIGSFLNLGFEQVYLMT--NSLNRSVADIFDTYVYMMGITQGAYSYSTAVGLFKSV 296 Query: 304 FGFLLVLVANKLAGWYDKD 322 G +L+ AN +A +D++ Sbjct: 297 VGIILIFGANYIAKKFDQE 315 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,741,260 Number of extensions: 739631 Number of successful extensions: 2615 Number of sequences better than 1.0e-05: 151 Number of HSP's gapped: 2518 Number of HSP's successfully gapped: 151 Length of query: 326 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 219 Effective length of database: 26,037,693 Effective search space: 5702254767 Effective search space used: 5702254767 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)