BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0220.0004.p (319 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 171 2e-42 BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 170 3e-42 lin2116 [G] COG0395 ABC-type sugar transport system, permease co... 164 1e-40 SPy1593 [G] COG0395 ABC-type sugar transport system, permease co... 148 1e-35 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 136 4e-32 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 146/242 (60%), Gaps = 4/242 (1%) Query: 11 IFFYCCIAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEFLFGSKAQQI 70 IFF + + C++PF+ + S++ E + GYSF+P F + +EFL K +I Sbjct: 25 IFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFK-DKI 83 Query: 71 LRAYSMSVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFSGGTLPWYLL 130 L+A +SV VTV+GT++ V +TT YAY IS +F+ + +MLF+ G +P Y++ Sbjct: 84 LQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIM 143 Query: 131 STKYYHLGDTLIGLFIPYVLSVFLMFLMANYFR-SIPHEIVESAQIDGAGHLRIFFSIMI 189 T+ LGDT+ L +P +LS F + LM ++F+ +IP I+ESA+IDGA RIFF I + Sbjct: 144 VTRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICL 203 Query: 190 PLGRVGLVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLMYNMMANIQFLAS--GNAAQ 247 PL G+ TI+L AL FWND++ L+ + LY +QYL+ + N+ ++A G Q Sbjct: 204 PLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPLQYLLMQIQQNMDYIAKAVGLIGQ 263 Query: 248 VG 249 +G Sbjct: 264 LG 265 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 92/271 (33%), Positives = 155/271 (57%), Gaps = 18/271 (6%) Query: 11 IFFYCCIAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEFLFGSKAQQI 70 IF + I F+ +C+ PFI + SL++E +A GY P ++F+ Y +L+ +++ + Sbjct: 37 IFMHTLIGTFAFLCIFPFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSE-V 95 Query: 71 LRAYSMSVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFSGGTLPWYLL 130 RAY +++ +TV+GT+ +V + YAY IS K F + TMLFSGG +P+Y++ Sbjct: 96 FRAYGVTIFITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIV 155 Query: 131 STKYYHLGDTLIGLFIPYVLSVFLMFLMANYF-RSIPHEIVESAQIDGAGHLRIFFSIMI 189 T++ L +++ L +P ++ F + +M +F RS+P I+ESA+IDGAG RIFF I++ Sbjct: 156 MTQFLGLKNSVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVL 215 Query: 190 PLGRVGLVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLMYNMMANIQFLASGNAAQVG 249 PL G+ TI+LF L +WND++ L+ + D KL +Q L+ + N+ F+ Sbjct: 216 PLSIPGIATIALFSTLAYWNDWFNALLFIDDPKLVPLQSLLMRIENNLDFI--------- 266 Query: 250 GXXXXRTAAGDSQNG---DDLPDRAANRHII 277 + A SQN D +P +A ++ Sbjct: 267 ----RQNAMLSSQNSALLDSIPQDSARMAMV 293 >lin2116 [G] COG0395 ABC-type sugar transport system, permease component Length = 323 Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 142/225 (63%), Gaps = 2/225 (0%) Query: 17 IAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEFLFGSKAQQILRAYSM 76 +A + IC+ PF+ + S S+E+ +AA G+ P+ ++ E YE+L+ K Q +L++Y + Sbjct: 45 LAFLALICIFPFLYIIVISFSSETSLAANGFQLIPKEWSMEAYEYLWKMKGQ-LLQSYGI 103 Query: 77 SVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFSGGTLPWYLLSTKYYH 136 +++VTV+GTV +V + Y+Y IS F+ + TMLFSGG +P Y++ T++ H Sbjct: 104 TIVVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQFLH 163 Query: 137 LGDTLIGLFIPYVLSVFLMFLMANYF-RSIPHEIVESAQIDGAGHLRIFFSIMIPLGRVG 195 L +++ + +P ++ F + +M +F RSIP I+E+A+I+GAG LRIF +++PL G Sbjct: 164 LRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPG 223 Query: 196 LVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLMYNMMANIQFL 240 L TI+LF L +WND++ + + + L +Q L+ + N++F+ Sbjct: 224 LATIALFSTLGYWNDWFQASLYIDNPNLVPLQSLLMKIENNLEFM 268 >SPy1593 [G] COG0395 ABC-type sugar transport system, permease component Length = 308 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 145/241 (60%), Gaps = 4/241 (1%) Query: 13 FYCCIAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEFLF-GSKAQQIL 71 F I +F+ C++PFI + S + ES + GYSF+P ++ + Y+++F G+ + +I+ Sbjct: 23 FNILIGLFAISCIIPFIFVIIISFTDESYLINHGYSFFPDVWSTKAYQYIFQGAMSHRIM 82 Query: 72 RAYSMSVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFSGGTLPWYLLS 131 R++ +SV +TV+GT +T+ YAY IS F + TMLF+ G + YL+ Sbjct: 83 RSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLFAPGMVANYLVV 142 Query: 132 TKYYHLGDTLIGLFIPYVLSVFLMFLMANYFR-SIPHEIVESAQIDGAGHLRIFFSIMIP 190 + HL DT+ L +P L F + +M +F+ ++P I+ESA++DGA IF I++P Sbjct: 143 SNLLHLKDTVWALILPMALGPFGILVMRTFFKKTVPDSIIESARMDGASEWMIFMKIVLP 202 Query: 191 LGRVGLVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLMYNMMANIQFLA--SGNAAQV 248 L G+ TISLF AL +WND++ L+ V + LY +QYL+ + +N+Q LA +G +AQ+ Sbjct: 203 LAVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQYLLMKIQSNLQALAQNAGMSAQM 262 Query: 249 G 249 Sbjct: 263 A 263 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 3/229 (1%) Query: 2 QTTENKGLLIFFYCCIAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEF 61 Q+ ++ IF Y + +FS IC +PF+ V+GS ++ + + + +P F+ + Y + Sbjct: 5 QSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRY 64 Query: 62 LFGSKAQQILRAYSMSVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFS 121 +F + I R+ +S++VTV+GT ++ +T+ AY +S K + TMLFS Sbjct: 65 IFSTDI--IFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFS 122 Query: 122 GGTLPWYLLSTKYYHLGDTLIGLFIPYVLSVFLMFLMANYFRSIPHEIVESAQIDGAGHL 181 GG +P +L+ + L DT L IP ++ F + ++ N+F++IP + ESA+IDG + Sbjct: 123 GGMIPTFLV-VRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDV 181 Query: 182 RIFFSIMIPLGRVGLVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLM 230 IFF I+ PL + TISLFYA+ +WN F ++ + D ++ IQ L+ Sbjct: 182 GIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLL 230 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,634,633 Number of extensions: 796616 Number of successful extensions: 1990 Number of sequences better than 1.0e-05: 134 Number of HSP's gapped: 1936 Number of HSP's successfully gapped: 134 Length of query: 319 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 213 Effective length of database: 26,153,027 Effective search space: 5570594751 Effective search space used: 5570594751 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)