BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0220.0003.p (510 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP0092 [G] COG1653 ABC-type sugar transport system, periplasmic ... 117 6e-26 BH0796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 115 1e-25 lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic... 96 1e-19 SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic... 90 8e-18 SPy1591 [G] COG1653 ABC-type sugar transport system, periplasmic... 57 5e-08 >SP0092 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 491 Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 122/469 (26%), Positives = 220/469 (46%), Gaps = 37/469 (7%) Query: 59 LKIVLYGDESNRMKELAKTEFYDVIKKEINAEVEFHFLPWTEYGGGKTDLMLSTGEDFAT 118 +K+ GD+ + + EL +I++++ A+++ +L W +YG K ++ S+GE++ Sbjct: 43 IKMYQIGDKPDNLDELLANA-NKIIEEKVGAKLDIQYLGWGDYGK-KMSVITSSGENYDI 100 Query: 119 YTDANYMVKSVAKGLYADLTP-YVSAAADLSKNVDEASFKAFQLDGKQYAIPVGNKPNSA 177 NY+V + KG YADLT Y DL K +D A K ++GK YA+PV S+ Sbjct: 101 AFADNYIVNA-QKGAYADLTELYKKEGKDLYKALDPAYIKGNTVNGKIYAVPVAANVASS 159 Query: 178 EFYSALVRQDLLEEAGM--TQVTSLKELEQFYDKVHAIHPELIGYANTDARRILQYDYTD 235 + ++ LL + G+ + VTS + LE ++ P+++ +A + + D D Sbjct: 160 QNFA--FNGTLLAKYGIDISGVTSYETLEPVLKQIKEKAPDVVPFA--IGKVFIPSDNFD 215 Query: 236 KNLYWQNDFIALDESAKDDKIISWFETEEFKKYANLMRGWYEKGIIPKYAATNVPQ--LQ 293 + F+ +D K+++ +E FK++ + +YE G IPK AT+ LQ Sbjct: 216 YPVANGLPFV-IDLEGDTTKVVNRYEVPRFKEHLKTLHKFYEAGYIPKDVATSDTSFDLQ 274 Query: 294 SD-WNSGKAMFWAGTAARPFE-GAATISQAVP---EAKLVNYFLGSGRPKISRGTYSTAF 348 D W F P + G + +S+ + K + F+ K ++ T F Sbjct: 275 QDTW------FVREETVGPADYGNSLLSRVANKDIQIKPITNFI-----KKNQTTQVANF 323 Query: 349 FVSTAAKDPERYVMFFNLLQKNQELYDLFAYGIKGTDYTVDENGRLTKINT------DSL 402 +S +K+ E+ + NLL N EL + YG +G ++ E G+ ++ ++ Sbjct: 324 VISNNSKNKEKSMEILNLLNTNPELLNGLVYGPEGKNWEKIE-GKENRVRVLDGYKGNTH 382 Query: 403 IPDWLLMNKNFIRFDNTVPDEFIAEYKAWDDGAIISKGAGFNFDNTPVKNEETKLNGVFT 462 + W N + + V D+ I K A S GF F+ VK+E + + Sbjct: 383 MGGWNTGNNWILYINENVTDQQIENSKKELAEAKESPALGFIFNTDNVKSEISAIANTMQ 442 Query: 463 EYLAPIGSGFSDYDTAFPKALDRLKAAGI-DKYIAEYQKQFSEWYAKQK 510 ++ I +G D D A P+ +++LK+ G +K + E QKQ+ E+ +K Sbjct: 443 QFDTAINTGTVDPDKAIPELMEKLKSEGAYEKVLNEMQKQYDEFLKNKK 491 >BH0796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 500 Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 132/524 (25%), Positives = 222/524 (42%), Gaps = 60/524 (11%) Query: 8 LSLLLAAGFLVG--GCSQGNNESAAPSSGSGNEGTPSVTDNGSKDGSPLAPAKLKIVLYG 65 + L + LVG CS N S + G G S + + D L L + G Sbjct: 6 MKLAVMVFLLVGLVACSSANESSQSEPEGHDESGEQSANETEATD---LDHVTLTWYMIG 62 Query: 66 DESNRMKELAKTEFYDVIKKEINAEVEFHFLPWTEYGGGKTDLMLSTGE--DFA-TYTDA 122 + EL E +++INA V+ L W EY + ++ ++GE D A T + A Sbjct: 63 TPQPDL-ELVMEEVNAYTEEKINATVDLRMLDWGEYDE-RMQVITTSGEAYDIAFTSSWA 120 Query: 123 NYMVKSVAKGLYADLTPYV-SAAADLSKNVDEASFKAFQLDGKQYAIPVGNKPNSA---E 178 N + +G + +L + ++ + +D A + Q+DGK YA+P + Sbjct: 121 NNYALNARRGAFLELNDLLDEHGQEMKELIDPAFLEGAQVDGKLYAVPTNKEVGQQAVLS 180 Query: 179 FYSALVRQDLLEEAGMTQVTSLKELEQFYDKVHAIHPELIGYANTDARRILQYDYTDKNL 238 F + LV + L+ ++ V SL +LE + ++ A DA Y D L Sbjct: 181 FNNELVEKHNLD---LSSVHSLADLEPLLAVIKEEESDVTPIATFDA-----YLPFDSIL 232 Query: 239 YWQNDFIALDESAKDDKIISWFETEEFKKYANLMRGWYEKGIIPKYAATNV---PQLQSD 295 + F A +++I+ +E + + M +Y+KG I AAT+ P + Sbjct: 233 QEEMPF-AFRLEGNTNEVINKYEEDITMETLKTMHDYYKKGYIRPDAATSTDSWPLETPN 291 Query: 296 WNSGKAMF-------WAGTAARPFEGAATISQAVPEAKLVNYFLGSGRPKISRGTYSTAF 348 W K ++ W TA G ++ + E + N + IS Sbjct: 292 WFVRKELYQPYAELIWTRTA-----GYEIATRPLHEPYIFNNSVTGSMQAIS-------- 338 Query: 349 FVSTAAKDPERYVMFFNLLQKNQELYDLFAYGIKGTDYTVDENG-------RLTKINTDS 401 +K+PER +MF NLL + L +L GI+G Y E+G R+ + N Sbjct: 339 ---ATSKNPERAMMFLNLLNSDPYLRNLLDKGIEGVHYEELEDGTINDLPARVERYN--- 392 Query: 402 LIPDWLLMNKNFIRFDNTVPDEFIAEYKAWDDGAIISKGAGFNFDNTPVKNEETKLNGVF 461 +P + + N+ ++ P + ++A+++ AI S GF FD+ PV+ E ++ V Sbjct: 393 -MPSFAIGNQLILKLYEDDPQDKWEAFEAFNESAIPSPALGFYFDSNPVRTEIAAISNVT 451 Query: 462 TEYLAPIGSGFSDYDTAFPKALDRLKAAGIDKYIAEYQKQFSEW 505 +E+ + G D + P D+L AG+ K I E Q+QF EW Sbjct: 452 SEFSPALLKGAVDPEEYLPLFNDKLNEAGLQKVIDEMQRQFDEW 495 >lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 485 Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 119/521 (22%), Positives = 225/521 (43%), Gaps = 47/521 (9%) Query: 1 MKKKKGWLSLLLAAGFLVGGCSQGNNESAAPSSGSGNEGTPSVTDNGSKDGSPLAPAKLK 60 MKKK G + L ++G C G++E A NE P+ LK Sbjct: 1 MKKKWGVIIASLCLLLVLGAC--GSDEKA-----DANE-VPT----------------LK 36 Query: 61 IVLYGDESNRMKELAKTEFYDVIKKEINAEVEFHFLPWTEYGGGKTDLMLSTGEDF-ATY 119 + G +E+ K E +++I +VE + W +YG + ++++GE+F Y Sbjct: 37 WYMIGTPQKDTEEVMK-EVNKYTEEKIGVKVEMTQIDWGDYGK-RMQTVINSGENFDIAY 94 Query: 120 TDANYMVKSVAKGLYADLTPYV-SAAADLSKNVDEASFKAFQLDGKQYAIPVGNKPNSAE 178 + A V KG + L Y+ + ++E ++ +DG Y +P + + Sbjct: 95 SAAGEFVSYSQKGAFLPLNKYLDKEGKKMKAELNEVLWEGATIDGNIYGVPSNKEVGEQQ 154 Query: 179 FYSALVRQDLLEEAGM--TQVTSLKELEQFYDKVHAIHPEL--IGYANTDARRILQYDYT 234 Y + ++L+++ M ++V + +LE + P + IG N D + YDY Sbjct: 155 VY--VFNKNLVDKYKMDISKVKNFSDLEPMLKTIKENEPSITPIG-GNKDFKPAFSYDYL 211 Query: 235 DKNLYWQNDFIALDESAKDDKIISWFETEEFKKYANLMRGWYEKGIIPKYAATNVPQLQS 294 N A+++ KI++++E + + + +Y+KG + K AT+ Sbjct: 212 IDNAVPLP--FAVNQYEDTGKIVNFYEQPDTLETLKSLHSFYQKGYVTKDIATST----D 265 Query: 295 DWNSGKAMFWAGTAA-RPFEGAATISQAVPEAKLVNYFLGSGRPKISRGTYSTAF-FVST 352 W+ K ++ +P+ + K+V + P I + + A VS Sbjct: 266 PWSYDKENWFVRIEKYQPYAENIWDKNTGGKYKVVTQPIAE-TPIIKNNSVTGAIQAVSV 324 Query: 353 AAKDPERYVMFFNLLQKNQELYDLFAYGIKGTDYTVDENGRLTKINTDS---LIPDWLLM 409 ++ PE V F +LL ++ L +L GI+GT Y ++G++ + +P + L Sbjct: 325 TSQHPEEAVKFLDLLNTDEYLRNLVDKGIEGTHYKELDDGKIQDLPARVERYSMPTYALG 384 Query: 410 NKNFIRFDNTVPDEFIAEYKAWDDGAIISKGAGFNFDNTPVKNEETKLNGVFTEYLAPIG 469 N ++ P + ++K ++ ++ S G GF FD++ V+ E + V E+ + Sbjct: 385 NHFILKLYEDEPADKWDQFKTFNKKSVASPGLGFYFDSSKVRTEIASITNVCNEFAPALL 444 Query: 470 SGFSDYDTAFPKALDRLKAAGIDKYIAEYQKQFSEWYAKQK 510 +G D K +L AG+ K + E QKQ+ E+ A Q+ Sbjct: 445 TGTVDPVEYTEKFKAKLNDAGMKKVMKEMQKQYDEYRATQE 485 >SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 380 Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 93/341 (27%), Positives = 153/341 (44%), Gaps = 19/341 (5%) Query: 48 SKDGSPLAPAKLKIVLYGDESNRMKELAKTEFYDVIKKEINAEVEFHFLPWTEYGGGKTD 107 SK S + KL + GD+ + EL T IK++ A V+ ++ W ++ K Sbjct: 25 SKSASKDSDVKLLMYQVGDKPDNFDELM-TIANKRIKEKTGATVDLQYIGWGDWDD-KMS 82 Query: 108 LMLSTGEDFATYTDANYMVKSVAKGLYADLTPYVSAAADLS-KNVDEASFKAFQLDGKQY 166 ++++GE++ NY+V + KG +ADLT + A + KN+D A K +DGK Y Sbjct: 83 TIIASGENYDIAFANNYVVNA-QKGAFADLTTLMPKYAKKTYKNLDPAYIKGNTIDGKLY 141 Query: 167 AIPVGNKPNSAEFYSALVRQDLLEEAGM--TQVTSLKELEQFYDKVHAIHPELIGYANTD 224 A PV + + S ++L+++ G+ + + S + E + H P +A Sbjct: 142 AFPVDANVYAQQMLS--FNKELVDKYGLDISNIKSYADAENVLKQFHEKEPNTAAFAIGQ 199 Query: 225 ARRIL-QYDYTDKNLYWQNDF-IALDESAKDDKIISWFETEEFKKYANLMRGWYEKGIIP 282 + YDY L F + +DE II+ +E E FK LM WY++G+IP Sbjct: 200 VFSMSGDYDYP---LTKTQPFAVKIDEGKP--TIINQYEDESFKNNLRLMHKWYKEGLIP 254 Query: 283 KYAATNVPQLQSDWNSGKAMFWAGTAARPFEGAATISQAVPEAKLVNYFLGSGRPKISRG 342 AATN + G F P + TI +V+ L S+ Sbjct: 255 TDAATNTEGYPLE---GNTWFMREETQGPMDYGDTILTNAAGKDIVSRPLTKPLKTTSQA 311 Query: 343 TYSTAFFVSTAAKDPERYVMFFNLLQKNQELYDLFAYGIKG 383 + F VS+ +K+ E+ V +LL + EL + YG++G Sbjct: 312 QMAN-FVVSSVSKNKEKAVEVLSLLNSDPELLNGLVYGVEG 351 >SPy1591 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 110 Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 48/105 (45%) Query: 406 WLLMNKNFIRFDNTVPDEFIAEYKAWDDGAIISKGAGFNFDNTPVKNEETKLNGVFTEYL 465 W N + +V D+ IA+ A S GF D +K E + ++ V Y Sbjct: 6 WNTGNNKILYTQESVTDDMIAKRDQSIKDAKESPILGFTVDTKVIKTELSNISNVMNRYK 65 Query: 466 APIGSGFSDYDTAFPKALDRLKAAGIDKYIAEYQKQFSEWYAKQK 510 A I +G D D A PK L LK AG DK E QKQ ++ AK K Sbjct: 66 ASINTGTVDPDEALPKLLADLKGAGWDKVQKEVQKQLDDFVAKDK 110 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 39,967,106 Number of extensions: 1738383 Number of successful extensions: 2816 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 2805 Number of HSP's successfully gapped: 6 Length of query: 510 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 399 Effective length of database: 25,576,357 Effective search space: 10204966443 Effective search space used: 10204966443 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)