BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0217.0018.p (358 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_oppD [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 531 e-151 SA0847 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 420 e-117 L148976 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 379 e-105 CAC3642 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 378 e-105 CAC3636 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 365 e-101 >BS_oppD [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 337 Score = 531 bits (1368), Expect = e-151, Method: Compositional matrix adjust. Identities = 0/351 (0%), Positives = 0/351 (0%), Gaps = 3/351 (0%) Query: 3 RLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQPM 62 + + + + + + +G+++ Sbjct: 6 TATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQT 65 Query: 63 GEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFKHE 122 G + G+ + + E + + + E Sbjct: 66 AFALMGLLAANGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGE 125 Query: 123 KISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIADEP 182 ++ + + + + P + + + +A Sbjct: 126 QLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLC 185 Query: 183 TTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTAEE 242 L + + + + + + Sbjct: 186 RPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAG 245 Query: 243 IFYDPRHPYTWGLLASMPSLESKG-SLLTAIPGTPPDLIKPPKGDAFALRSTYAMQIDME 301 + + P ++ L P Sbjct: 246 RTMEYGNARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRC 305 Query: 302 KEPPMYKVSDTHXXXXKSWLMHPLXXXXXXXXXXXXRHRVLSNAYAEPVLV 352 S Sbjct: 306 PHAMEICSSAPP-- 354 >SA0847 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 360 Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/356 (58%), Positives = 255/356 (71%), Gaps = 3/356 (0%) Query: 2 ERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQP 61 ER+LEV DL +SF GEVQA+RGV F++NKGETLAIVGESGSGKSVT++A+ KL Sbjct: 3 ERILEVNDLHVSFDITAGEVQAVRGVDFYLNKGETLAIVGESGSGKSVTTKAITKLFQGD 62 Query: 62 MGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFKH 121 G K+G+ILF G+DL K E ++ K+RGK+I MIFQDPMTSLNP M++GKQ+ E L KH Sbjct: 63 TGRIKKGEILFLGEDLAKKPENELIKLRGKDISMIFQDPMTSLNPTMQIGKQVMEPLIKH 122 Query: 122 EKISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIADE 181 + SK A KR +E+LNLVG+P+ E+RF+ YPH+FSGG RQR+VIA ALA PK+LIADE Sbjct: 123 KNYSKAQAKKRALEILNLVGLPNAEKRFKAYPHQFSGGQRQRIVIATALACEPKVLIADE 182 Query: 182 PTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTAE 241 PTTALDVT+QAQILDLMK++Q+KIDTAIIFITHDLG GQ+VE G Sbjct: 183 PTTALDVTMQAQILDLMKELQQKIDTAIIFITHDLGVVANIADRVAVMYGGQMVETGDVN 242 Query: 242 EIFYDPRHPYTWGLLASMPSLESKGSL-LTAIPGTPPDLIKPPKGDAFALRSTYAMQIDM 300 EIFYDP+HPYTWGLL+SMP L + L AIPG PPDL+ PPKGDAFA RS YA+ ID Sbjct: 243 EIFYDPKHPYTWGLLSSMPDLSTTNDTPLLAIPGAPPDLLHPPKGDAFARRSQYALDIDF 302 Query: 301 EKEPPMYKVSDTHXXXXKSWLMHPLXXXXXXXXXXXXRHRVLSNAYAEPVLVNNPS 356 + EPP +KVS TH KSWL+ R + + N Y +P+ V S Sbjct: 303 KVEPPWFKVSPTH--FVKSWLLDARAPKVELPELVKQRMKPMPNNYEKPLKVERVS 356 >L148976 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 349 Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/330 (56%), Positives = 246/330 (74%), Gaps = 16/330 (4%) Query: 2 ERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKL---- 57 E++LEVK+L ++F T G+V+AIR VSF + KG+TLAIVGESGSGKSVT++ +M L Sbjct: 4 EKVLEVKNLHVNFHTYAGDVKAIRDVSFDLEKGQTLAIVGESGSGKSVTTKTLMGLNAKN 63 Query: 58 --VPQPMGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQIT 115 +PQ G++LF+G++L+ E++ QKIRG EI MIFQDPMTSL+P M++GKQI Sbjct: 64 AVIPQ-------GELLFKGRNLLDLKEEEWQKIRGNEISMIFQDPMTSLDPTMRIGKQIA 116 Query: 116 EVLFKHEK-ISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANP 174 E L KH K +SK A KR +EL+ VGIP E YPH++SGGMRQR VIA+ALAA+P Sbjct: 117 EPLLKHNKGMSKADAMKRALELMQQVGIPDAEVHINDYPHQWSGGMRQRAVIAIALAADP 176 Query: 175 KLLIADEPTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQI 234 ++LIADEPTTALDVTIQAQI+ +M ++Q++I+++I+FITHDLG G+I Sbjct: 177 EILIADEPTTALDVTIQAQIMHMMAELQERINSSIVFITHDLGVVAGFAHKVAVMYAGEI 236 Query: 235 VEMGTAEEIFYDPRHPYTWGLLASMPSLESKGSLLTAIPGTPPDLIKPPKGDAFALRSTY 294 VE GT EEIFY+P+HPYTWGLL SMP+++S L +IPGTPPDL+ PPKGDAFA R+ + Sbjct: 237 VEYGTVEEIFYNPQHPYTWGLLDSMPTVDSSVDRLVSIPGTPPDLLNPPKGDAFAARNKF 296 Query: 295 AMQIDMEKEPPMYKVSDTHXXXXKSWLMHP 324 A+ ID E+EPP ++VS TH K+WL+ P Sbjct: 297 ALAIDFEEEPPYFEVSPTH--FAKTWLLDP 324 >CAC3642 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 340 Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/326 (57%), Positives = 240/326 (73%), Gaps = 6/326 (1%) Query: 1 MERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQ 60 ME+LLE+K+L SF T GEV+++RG+SF +NKGE L IVGESGSGKSVT +VM L+ Q Sbjct: 1 MEKLLEIKNLNTSFFTHLGEVKSVRGISFELNKGEALGIVGESGSGKSVTMMSVMGLL-Q 59 Query: 61 PMGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFK 120 G+ G+I+F G DL+ +EK+M+KIRG ++GMIFQDPMTSLNP++ VG+Q+TE + K Sbjct: 60 ENGKIIDGEIIFNGVDLVKASEKEMEKIRGNKMGMIFQDPMTSLNPVLTVGEQLTEGIKK 119 Query: 121 HEKISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIAD 180 H K+S A K +E+L LVGIPSPE+R +QYPHEFSGGMRQRV+IAMA+A P+LLIAD Sbjct: 120 HLKMSSAEANKHAVEMLKLVGIPSPEKRMKQYPHEFSGGMRQRVMIAMAIACRPELLIAD 179 Query: 181 EPTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTA 240 EPTTALDVTIQAQIL+LMK+++ K++T+II ITHDLG G I+E G A Sbjct: 180 EPTTALDVTIQAQILELMKNLKDKMNTSIILITHDLGVVANLCTKINVMYGGTIIEKGNA 239 Query: 241 EEIFYDPRHPYTWGLLASM--PSLESKGSLLTAIPGTPPDLIKPPKGDAFALRSTYAMQI 298 EIFY+P+HPYTWGLL S+ P+ +SK L+ I G PPDL+ PPKG FA R Y M+I Sbjct: 240 REIFYNPKHPYTWGLLKSIPDPTKDSKEKLV-PIDGYPPDLLNPPKGCPFAARCPYTMEI 298 Query: 299 DMEKEPPMYKVSDTHXXXXKSWLMHP 324 MEK P +K+ + H WL HP Sbjct: 299 CMEKSAPAFKIGEDHEAA--CWLNHP 322 >CAC3636 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 340 Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/326 (57%), Positives = 234/326 (71%), Gaps = 6/326 (1%) Query: 1 MERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQ 60 ME+LLE+K+L SF T GEV+++RG+SF +NKGE L IVGESGSGKSVT +VM L+ Q Sbjct: 1 MEKLLEIKNLNTSFFTHLGEVKSVRGISFELNKGEALGIVGESGSGKSVTMMSVMGLL-Q 59 Query: 61 PMGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFK 120 G+ G+I+F G ++ EK+M+KIRG +IGMIFQDPMTSLNP++ +G QI E + K Sbjct: 60 ENGKIVEGEIIFNGMNITHAPEKEMEKIRGNKIGMIFQDPMTSLNPVLTIGNQIAEGIKK 119 Query: 121 HEKISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIAD 180 H ++ A KR IE+L LVGIPSPE+R +QYPHEFSGGMRQRV+IAMA+A P+LLIAD Sbjct: 120 HLNMNTSEAIKRAIEMLKLVGIPSPEKRMKQYPHEFSGGMRQRVMIAMAIACKPELLIAD 179 Query: 181 EPTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTA 240 EPTTALDVTIQAQIL+LMK +++K++T+II ITHDLG G IVE G A Sbjct: 180 EPTTALDVTIQAQILELMKKLKEKMNTSIILITHDLGVVANLCSKINVMYGGLIVEKGDA 239 Query: 241 EEIFYDPRHPYTWGLLASM--PSLESKGSLLTAIPGTPPDLIKPPKGDAFALRSTYAMQI 298 EIFY+P+HPYT GLL S+ P+ +SK L+ I G PPDL+ PPKG FA R Y M+I Sbjct: 240 REIFYNPKHPYTLGLLKSIPDPTKDSKEKLV-PIDGYPPDLLNPPKGCPFAARCPYTMEI 298 Query: 299 DMEKEPPMYKVSDTHXXXXKSWLMHP 324 ME P +K+ + H WL HP Sbjct: 299 CMEMPVPSFKIGENHEAA--CWLNHP 322 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,970,149 Number of extensions: 944495 Number of successful extensions: 10030 Number of sequences better than 1.0e-05: 1812 Number of HSP's gapped: 7652 Number of HSP's successfully gapped: 1930 Length of query: 358 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 250 Effective length of database: 25,922,359 Effective search space: 6480589750 Effective search space used: 6480589750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)