BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0013.p
         (88 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll1636 [K] COG1396 Predicted transcriptional regulators               49   2e-06

>mll1636 [K] COG1396 Predicted transcriptional regulators
          Length = 290

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%)

Query: 2   DFAKLPPEERNMISLLFVRKEFKRLAVNWQQFVRGYLSIFRAYYGQYVEDRWYDDFIAEM 61
           D+ +L  + RN+I  +F     + L  +W+Q  R  L+ FRA   +YV D  ++  IA M
Sbjct: 151 DYGQLEGDARNIIHGVFTDPHRRHLLADWEQVARATLAAFRAESARYVGDPDFERLIALM 210

Query: 62  KERHPEFHPLWEESRVSSXXXG 83
               PEF   W +  V     G
Sbjct: 211 MRSSPEFREWWPQRDVVHRLSG 232


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.142    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,864,809
Number of extensions: 237987
Number of successful extensions: 350
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 1
Length of query: 88
Length of database: 38,378,431
Length adjustment: 58
Effective length of query: 30
Effective length of database: 31,689,059
Effective search space: 950671770
Effective search space used: 950671770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)