BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0214.0002.p
         (86 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yxiE [T] COG0589 Universal stress protein UspA and related nu...    67   5e-12
PAE0685 [T] COG0589 Universal stress protein UspA and related nu...    66   1e-11
SSO1865 [T] COG0589 Universal stress protein UspA and related nu...    66   1e-11
SSO2778 [T] COG0589 Universal stress protein UspA and related nu...    64   5e-11
VNG1536C [T] COG0589 Universal stress protein UspA and related n...    62   3e-10

>BS_yxiE [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins
          Length = 148

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 47/73 (64%)

Query: 14  DEVKSRLEAEGLNATVELLQGSPAEVILTYAKEQGADVIVIGSRGLGGIREFVLGSVSHN 73
           +  K +   +G+ A      G PA  IL +AKE+G  +IV+GSRG+ G++E +LGSVSH 
Sbjct: 76  ENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSLIVVGSRGISGLKEMMLGSVSHK 135

Query: 74  VVQSARIPVLVVK 86
           V Q +  PVL+V+
Sbjct: 136 VSQLSTCPVLIVR 148


>PAE0685 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins
          Length = 133

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 9   AVQTTDEVKSRLEAEGLNAT-VELLQGSPAEVILTYAKEQGADVIVIGSRGLGGIREFVL 67
           A +   E  + L+++G+N   + +  G+PA  IL YA+E+  D+IV+GSRGL  I+  VL
Sbjct: 55  AKKIAQEAANALKSKGVNVDDIAVRSGTPATEILNYAEEKEVDLIVMGSRGLSAIQCLVL 114

Query: 68  GSVSHNVVQSARIPVLVVK 86
           GS S  VV  AR+PVLVV+
Sbjct: 115 GSASQAVVSRARVPVLVVR 133


>SSO1865 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins
          Length = 143

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 4   DYYDLAVQTTDEVKSRLEAEGL-NATVELLQGSPAEVILTYAKEQGADVIVIGSRGLGGI 62
           + Y+ A +  +E K +    G+ N     ++G PA  I+ YA + GAD+IV GSRGL  +
Sbjct: 60  EMYNKAKRDVEEAKEKAVNSGVKNVEAVNIEGDPAAAIMDYAGKTGADLIVTGSRGLSTV 119

Query: 63  REFVLGSVSHNVVQSARIPVLVVK 86
           +   LGSVS  +V  A+IPVLVVK
Sbjct: 120 KRIFLGSVSSRIVHEAKIPVLVVK 143


>SSO2778 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins
          Length = 139

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 48/68 (70%)

Query: 19  RLEAEGLNATVELLQGSPAEVILTYAKEQGADVIVIGSRGLGGIREFVLGSVSHNVVQSA 78
           + +++G+NA    ++G PA  IL +A +   DVIVIGSRGL  ++   LGSVS+ +VQ +
Sbjct: 72  KAKSKGVNAEGITVEGDPANSILQFATDNQIDVIVIGSRGLSKVQRIFLGSVSNKIVQES 131

Query: 79  RIPVLVVK 86
           ++PV+VVK
Sbjct: 132 KVPVVVVK 139


>VNG1536C [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins
          Length = 147

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 44/73 (60%)

Query: 14  DEVKSRLEAEGLNATVELLQGSPAEVILTYAKEQGADVIVIGSRGLGGIREFVLGSVSHN 73
           D V +     G+    EL  G+PA  I+TYA   G D+IV+G+ G GGI   +LGSV+  
Sbjct: 71  DTVTAAANDRGVATERELRDGNPAMEIVTYADNAGCDLIVMGTHGRGGIDRLLLGSVTEK 130

Query: 74  VVQSARIPVLVVK 86
           VV+S+ +PVL V 
Sbjct: 131 VVRSSSVPVLTVS 143


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.134    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,021,623
Number of extensions: 194155
Number of successful extensions: 731
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 45
Length of query: 86
Length of database: 38,378,431
Length adjustment: 56
Effective length of query: 30
Effective length of database: 31,919,727
Effective search space: 957591810
Effective search space used: 957591810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)