BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0212.0010.p
         (127 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1544 [E] COG0019 Diaminopimelate decarboxylase                      155   1e-38
SA1232 [E] COG0019 Diaminopimelate decarboxylase                      115   1e-26
sll0504 [E] COG0019 Diaminopimelate decarboxylase                     105   1e-23
Cgl1154 [E] COG0019 Diaminopimelate decarboxylase                      98   3e-21
mlr3508 [E] COG0019 Diaminopimelate decarboxylase                      68   4e-12

>BH1544 [E] COG0019 Diaminopimelate decarboxylase
          Length = 439

 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 90/121 (74%)

Query: 1   MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60
           MF HGTSR+N   HLEIGG D  EL   YGTPL++ D  L+R R +++ +AF   G+  Q
Sbjct: 1   MFFHGTSRVNGKGHLEIGGVDTVELANLYGTPLFVYDVALIRERAKDFKQAFADEGVQAQ 60

Query: 61  VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120
           VAYASKAFS +AM +LA+E GLSLDVVS GELYTA QAG   ERIHFHGNNK+  EIEMA
Sbjct: 61  VAYASKAFSCIAMFQLAEELGLSLDVVSGGELYTAQQAGVSMERIHFHGNNKSRAEIEMA 120

Query: 121 I 121
           +
Sbjct: 121 V 121


>SA1232 [E] COG0019 Diaminopimelate decarboxylase
          Length = 421

 Score =  115 bits (289), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/116 (48%), Positives = 73/116 (62%)

Query: 6   TSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQVAYAS 65
           T + N    L + G  +  +   +GTP  + DE  +R + R Y  AF  SGL + ++YAS
Sbjct: 2   TVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYAS 61

Query: 66  KAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMAI 121
           KAF+ + M +L  EE L LDVVS+GELYTAL+AGF   RIHFHGNNKT  EI  A+
Sbjct: 62  KAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYAL 117


>sll0504 [E] COG0019 Diaminopimelate decarboxylase
          Length = 469

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/129 (45%), Positives = 83/129 (64%), Gaps = 9/129 (6%)

Query: 2   FLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLG-FQ 60
            L  T+ IN    LEIGGC V  L  ++G+PLYI+DE  +R+  ++Y ++F A   G  Q
Sbjct: 28  LLPLTAVINKNGELEIGGCSVPALVEQFGSPLYILDETTLRQAAQQYRQSFQAHYPGSSQ 87

Query: 61  VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTAL----QAGFP----AERIHFHGNNK 112
           V YASKA+S +A+  +A +EGL  DVVS GEL+T +    Q G+     AE+I+FHGNNK
Sbjct: 88  VIYASKAWSCLAVVAIAAQEGLGFDVVSGGELFTTVSALKQLGWDEAEIAEKIYFHGNNK 147

Query: 113 TPDEIEMAI 121
           +  E++ AI
Sbjct: 148 SVQELQEAI 156


>Cgl1154 [E] COG0019 Diaminopimelate decarboxylase
          Length = 445

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 60/98 (61%), Gaps = 3/98 (3%)

Query: 15  LEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQVAYASKAFSVMAMC 74
           + + G  + +L  EYGTPL++VDE   R RCR+   AF   G    V YASKAF    + 
Sbjct: 27  VTVAGVPLPDLAEEYGTPLFVVDEDDFRSRCRDMATAFGGPG---NVHYASKAFLTKTIA 83

Query: 75  RLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNK 112
           R  DEEGL+LD+ S  EL  AL AGFPA RI  HGNNK
Sbjct: 84  RWVDEEGLALDIASINELGIALAAGFPASRITAHGNNK 121


>mlr3508 [E] COG0019 Diaminopimelate decarboxylase
          Length = 422

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 22  VTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQVAYASKAFSVMAMCRLADEEG 81
           + ++ A+ GTP Y      + R  R + +AF  +GL   V YA KA S  A+ R     G
Sbjct: 18  IPDIAAQVGTPFYCYSTATLTRHYRVFAQAF--AGLDALVCYAMKANSNQAVLRTLARLG 75

Query: 82  LSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMAI 121
              DVVS+GEL  AL AG PA +I F G  KT  EI++A+
Sbjct: 76  AGADVVSEGELRRALAAGIPASKILFSGVGKTAREIDLAL 115


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,855,338
Number of extensions: 283664
Number of successful extensions: 711
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 695
Number of HSP's successfully gapped: 22
Length of query: 127
Length of database: 38,378,431
Length adjustment: 93
Effective length of query: 34
Effective length of database: 27,652,369
Effective search space: 940180546
Effective search space used: 940180546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)