BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0006.p (1180 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2014 [M] COG4932 Predicted outer membrane protein 560 e-159 BH0361 [M] COG4932 Predicted outer membrane protein 498 e-140 L148778 [M] COG4932 Predicted outer membrane protein 361 4e-99 lin2282 [M] COG4932 Predicted outer membrane protein 142 2e-33 lin0203 [M] COG4932 Predicted outer membrane protein 109 2e-23 >BH2014 [M] COG4932 Predicted outer membrane protein Length = 1816 Score = 560 bits (1444), Expect = e-159, Method: Compositional matrix adjust. Identities = 357/967 (36%), Positives = 527/967 (54%), Gaps = 40/967 (4%) Query: 38 RDIITSVSMAVYGPDG---QTVTGSVYDVGSSVKLDYTWALPNGHGYVDGDTFAFQLPAQ 94 +IIT V V DG Q + + D+G + + Y W+LPNGHGY G TF FQLP Sbjct: 233 ENIITGVE--VRDEDGNILQADSTNHLDLGDPIGITYHWSLPNGHGYTAGSTFTFQLPDV 290 Query: 95 FELFNDI-NGSLVSDDGEVGSFTVSQSTHQVLMTFNNYIETHDNVQGTLSINTQFDKKVI 153 F L+NDI N LV + EVG+FT++Q V MTFN IE N+ G L + T+ K+ + Sbjct: 291 FHLYNDIENEPLVFNGTEVGTFTITQD-GTVTMTFNEMIEQLFNINGMLQVWTEI-KEDL 348 Query: 154 SGSTVQEIVFPV-NGGTQTIVVNFKPSVGSTIEKKG-VSGGFNADHIDWTVDVNKKLERV 211 G ++IVF V + + V F+ S I+K+G V G+NA I WTVD NK++ + Sbjct: 349 QGDVRRDIVFEVKDEELLRLPVQFRVPSASMIDKQGIVDRGYNATEITWTVDFNKQMREI 408 Query: 212 AGAVVTDPIPEGLALDSTVTLAVYALGVQLDGTVTVGALLDSSKYTAEVTDGT-LKVHFT 270 AV+ DPI G AL + ++ VY L VQL+G+V G L+D S Y+ DG +++F Sbjct: 409 DNAVLRDPIQLGQALQAG-SIEVYELNVQLNGSVVQGDLVDPSNYSIGQIDGDDFQINFG 467 Query: 271 DPAITGAYRIAYTTAVVSDTRSSFTNTASFAGDGREPVSSSATVTIERGGSLNKLATNYE 330 D I AYR+ + T + +S+ N A+ GD +P+ ++A+V +RG + K +T Y Sbjct: 468 D--IDSAYRVVFKTDITDGDATSYQNVATLDGDNIDPMPANASVGTQRGVPIAKTSTGYN 525 Query: 331 WGKQVISWAIEYNYNNKAIPQGSGVLTDLFNNSQELVPGSVKVYPVTLNSSGTAVKGTAL 390 Q ISW I YNYN K + + +LTD F NSQEL+PGS +V +T++ +G A + + Sbjct: 526 SATQTISWEIRYNYNEKTVAEADAILTDWFTNSQELIPGSFRVIRMTIDENGNATEDEEV 585 Query: 391 SENVDYTVTEATGQGKKGFKLEFLHDISSAFRIEYKTKSADRVLTDTTISNTV-SDSTYS 449 S ++T+TE + + GF+L+F DI++A++I Y+T S++RVL + TI NTV + + Sbjct: 586 S---NFTLTETSNASQNGFELQFNEDINNAYKIVYQTTSSERVLGNQTIQNTVETGEGRT 642 Query: 450 VEASQLIRSAIIYKNLSGVDYKNHTTDWKITLNGDGYPMNNVVVTDTFPQGGQKFIPESV 509 A++ I + +K +Y+ T W ITLN D Y M NV +TD F GG I + Sbjct: 643 AGANRSIGQVVFHKRHGTPNYQEKTIPWTITLNDDSYEMTNVTITDVFNNGGLTLIDGTF 702 Query: 510 VVRNASGTVLGASAYTLEYNSPVKPNAGFKVKFTSPVSGTHTIAYRTEFSNDWLYGNTDN 569 +R+ S T++ YT + GF ++FT+P++ H I Y T F + + N Sbjct: 703 TIRSGSTTLVQGVDYTFALDGA----DGFTIEFTNPITTPHVIEYVTAFDYEARQDKSRN 758 Query: 570 FVNN-ARIDWV-GGDGKAQWTEAKGLFIPRAEVKNNGFKAGAYNARYKLFAWTLGINYNS 627 ++N A ++WV G+ ++ +A +F P + +NNGFK G+YNA K W +G+NYN Sbjct: 759 VLDNVATLEWVPEGETDSRSMQATAVFAPDSNTRNNGFKNGSYNAVTKEITWNIGVNYNL 818 Query: 628 KVIADPVITDILTSGQIMADGSLRVFNMNIDANGEPSRGSEIPKNAYTYTV-----GTGN 682 + + D V+ D + GQ + S+ VF M + ++ Y + G GN Sbjct: 819 QELHDAVVEDFIQEGQHLVADSIEVFEMGLTGGANGVNQGDLLTEGVDYDLVMVQDGDGN 878 Query: 683 E-LKVTFKDAISSPYYVVFNTTMQGQLIGPKVDNTAKLLDGTRKVSKDLFASVNIPYGGE 741 +V F+D I SPY++ F T++ +LI N A +L + L A+V++ +GGE Sbjct: 879 PGFRVEFRDTIDSPYWISFKTSLDERLIKQTYQNEA-ILSSSNTDDFRLDAAVSVQHGGE 937 Query: 742 YVYKNGVQNGDKLDWTIAINRSQSTIKNAVLTDIPSRNQILLPDSFHLYPAYAETNGELI 801 YV K+GVQ+G +DW I IN +QST+ NA + D+PS NQILL DSF L+ TNG + Sbjct: 938 YVNKSGVQDGRVIDWRININYTQSTVTNAKIVDVPSPNQILLEDSFQLFSTNVATNGTIT 997 Query: 802 KGGPELVRDSDYTLRVITDEGGKQSFVLSFLHDISYAHILEYKSLIVANTGEKLVNTVNL 861 KG P L R DY L + TDE G ++F LSF + I A+ILEYKS I A E + N V+ Sbjct: 998 KGAP-LERGVDYILEIFTDEDGNETFELSFPNVIDRAYILEYKSFIYAQNNEFVSNQVSF 1056 Query: 862 TGTNVERVTQETT---REIXXXXXXXXXXXXXXXXXLAVQKLDAADSQLLLAGATFELYR 918 G + T E+T I + V K+DA + LAGATF LY Sbjct: 1057 EGDEI--TTNESTNSSESIQVRLSGGSGTGSGERGSIEVTKVDATSGE-TLAGATFVLYD 1113 Query: 919 LNGSERVLINTRTTDAAGSAVFNNIWLGSYVLIETAAPAGYALDTREYPVTIGSSATINL 978 G +++ T T G A F N+ Y+L ET+AP GY + + ++ L Sbjct: 1114 STG--EIVLRTVVTGEDGIATFANLMYDDYILRETSAPEGYLVGINDSEHITLNTELHEL 1171 Query: 979 TVLNTKL 985 TV N K+ Sbjct: 1172 TVENAKI 1178 >BH0361 [M] COG4932 Predicted outer membrane protein Length = 1661 Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust. Identities = 343/959 (35%), Positives = 495/959 (51%), Gaps = 56/959 (5%) Query: 31 AAGIENDRDIITSVSM---------AVYGPDGQTVTGSVYDVGSSVKLDYTWALPNGHGY 81 A+G E +I+TSV + A PD + +GS+V++ Y W L N HGY Sbjct: 216 ASGSEITENILTSVQLKDEEGNLIHANENPDLRPA------LGSAVEVIYNWKLRNNHGY 269 Query: 82 VDGDTFAFQLPAQFELFNDI-NGSLV--SDDGEVGSFTVSQSTHQVLMTFNNYIETHDNV 138 G TF FQLP F +N+I N LV + VGSF V+ + V MTFN IE N+ Sbjct: 270 TAGSTFTFQLPDAFRFYNNIENEPLVFTQANTTVGSFNVT-TDGTVTMTFNESIEQLSNI 328 Query: 139 QGTLSINTQFDKKVISGSTVQEIVFPVNGGT-QTIVVNFKPSVGSTIEKKGV-SGGFNAD 196 +G L + T+F ++ + G +Q I F +I V F+ + G +I+K+GV FNA Sbjct: 329 RGNLHLWTEF-REDLQGDRLQVIHFEAKDEVIASIPVEFENATGHSIDKRGVVDQTFNAT 387 Query: 197 HIDWTVDVNKKLERVAGAVVTDPIPEGLALDSTVTLAVYALGVQLDGTVTVGALLDSSKY 256 I WTVD NK+L+ + A++ DPI G AL + ++ VY L VQLDG+V GA +D S Y Sbjct: 388 EIKWTVDFNKQLQPIEQAILKDPIQTGQALRAG-SIKVYELNVQLDGSVVQGAEVDPSSY 446 Query: 257 TAEVTDGT-LKVHFTDPAITGAYRIAYTTAVVSDTRSSFTNTASFAGDGREPVSSSATVT 315 T E DG ++ F +I AYR+ + T + + + + N A+ G+ + +S+ A V Sbjct: 447 TIEQVDGNDFQIVF--GSIDSAYRVEFITDITNRNATYYMNRATLTGENIDDLSADAGVW 504 Query: 316 IERGGSLNKLATNYEWGKQVISWAIEYNYNNKAIPQGSGVLTDLFNNSQELVPGSVKVYP 375 RG L+K +T Y+ Q I+W I+YNY+ K I Q VLTDLF NS L+ S+KVY Sbjct: 505 THRGTPLSKASTGYDPATQTITWEIKYNYDGKLIRQADAVLTDLFTNSHILLDDSMKVYR 564 Query: 376 VTLNSSGTAVKGTALSENVDYTVTEATGQGKKGFKLEFLHDISSAFRIEYKTKSADRVLT 435 VT+N G V +S +Y+V + + GF L+F D+ +++I Y+T +A+R Sbjct: 565 VTINEHGNEVSTEEVS---NYSVNGTSDEDHNGFVLQFTEDVQDSYKIIYQTTAAERGFE 621 Query: 436 DTTISNTVSDSTYSVEASQLIRSAIIYKNLSGVDYKNHTTDWKITLNGDGYPMNNVVVTD 495 D TI NTV+ + + S+ + K +DY T W+ N + + NV+++D Sbjct: 622 DATIENTVTTGDHEAKTSRTVHQQTFNKWRGQIDYAKKTVAWEYFFNEERQELTNVIISD 681 Query: 496 TFPQGGQKFIPESVVVRNASGTVLGASAYTLEYNSP---VKPNAGFKVKFTSPVSGTHTI 552 F GG I +S + + T TLE + V GF ++F +P++ H + Sbjct: 682 VFANGGLTLIEDSFTITSFPST---DEEVTLENGNDYRVVTNETGFTIEFMAPITEPHHV 738 Query: 553 AYRTEFSNDWLYGNTDNFVNN-ARIDWVGGDGKAQWTEAKGLFIPRAEVKNNGFKAGAYN 611 Y T F D F+ N A + W G E K F P +NNGFK G YN Sbjct: 739 RYETTFDFDARDDKNKAFLENGATLQWQTSSGNTMKKEGKSEFHPDTFTRNNGFKNGLYN 798 Query: 612 ARYKLFAWTLGINYNSKVIADPVITDILTSGQIMADGSLRVFNMNIDA--NGEPSRGSEI 669 A K W +G+NYN + ++ D + GQ + S+ V+ M + +G S+GS++ Sbjct: 799 ATSKEITWNIGVNYNLHTLEHAIVEDFVREGQRLLMDSIEVYEMGLLGWWDG-VSQGSKL 857 Query: 670 PKNAYTYTV-----GTGNE-LKVTFKDAISSPYYVVFNTTMQGQLIGPKVDNTAKLL-DG 722 + Y + G G+ +V F + I S Y++ F T+++ LI N A L D Sbjct: 858 EEGT-DYVIEAVEDGEGHPGFQVRFLNTIDSAYWITFKTSLEDTLIKSNYPNRATLKSDN 916 Query: 723 TRKVSKDLFASVNIPYGGEYVYKNGVQNGDKLDWTIAINRSQSTIKNAVLTDIPSRNQIL 782 + D ASV++ +GGE+V K+G QNG +DW++ IN SQS+I NA + D PS NQIL Sbjct: 917 AEDFNVD--ASVSVRHGGEFVTKSGAQNGRLIDWSLNINFSQSSISNAKIVDEPSVNQIL 974 Query: 783 LPDSFHLYPAYAETNGELIKGGPELVRDSDYTLRVITDEGGKQSFVLSFLHDISYAHILE 842 L D+F LY + NG + K G EL RD DYTL + TD G Q F L F DI +ILE Sbjct: 975 LEDTFRLYATNVQPNGTMTK-GDELERDKDYTLDIRTDGEGNQHFELQFTEDIDTGYILE 1033 Query: 843 YKSLIVANTGEKLVNTVNLTGTNV--ERVTQETTREIXXXXXXXXXXXXXXXXXLAVQKL 900 Y+S I A G+ + N V L G + E VT E++ + L V K+ Sbjct: 1034 YQSFINARNGDVVTNNVKLEGDQLTTEEVT-ESSGAVSVRLSGGAGTGSGETGSLEVTKV 1092 Query: 901 DAADSQLLLAGATFELYRLNGSERVLINTRTTDAAGSAVFNNIWLGSYVLIETAAPAGY 959 D AD+ +L GATF LY G I T T G A F N+ G Y+L E +AP GY Sbjct: 1093 D-ADTGEVLQGATFTLYDSEG--EFAIRTLETGEDGKATFVNLLYGDYLLKEDSAPEGY 1148 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 2/64 (3%) Query: 899 KLDAADSQLLLAGATFELYRLNGSERVLINTRTTDAAGSAVFNNIWLGSYVLIETAAPAG 958 K+DA D+ + L GA F L L+G V+ TTDA G V ++ G Y +ET APAG Sbjct: 1378 KVDADDAAITLEGAEFSL--LDGEGNVVQEGLTTDATGQVVVTDLKPGEYQFVETKAPAG 1435 Query: 959 YALD 962 Y LD Sbjct: 1436 YELD 1439 >L148778 [M] COG4932 Predicted outer membrane protein Length = 1983 Score = 361 bits (926), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 279/939 (29%), Positives = 465/939 (49%), Gaps = 71/939 (7%) Query: 63 VGSSVKLDYTWALPNG-HGYVDGDTFAFQLPAQFELFNDINGSLVSDDGEVGSFTVSQST 121 + + V++DYTW++P GD F F+LP + S G+ G++T++ + Sbjct: 237 IDAEVQIDYTWSIPEDILPLKSGDYFDFKLPDGVTI-----EQATSSLGDYGTYTIN-AD 290 Query: 122 HQVLMTFNNYIETHDNVQGTLSINTQFDKKVISGSTVQEIVFPVNGGTQTIVVNFKPSVG 181 V FN +ET+ +++GT + FDK ++ G V + P ++ +P+ Sbjct: 291 GTVRFVFNEKVETYHDIKGTFHYDAHFDKTIVPGEVV--VDTPTEENFPPSEIHVRPTYD 348 Query: 182 STIEKKGVSGGF----NADHIDWTVDVNKKLERVAGAVVTDPIPEGLALDSTVTLAVYAL 237 I+K SG F N + W +++N+ L + A +TDP+PEG +S + +Y Sbjct: 349 QAIDK---SGHFDKTPNPSEVIWEININRPLNTMENATLTDPMPEGTTYES---VEIYPE 402 Query: 238 GVQLDGTV----TVGALLDSSKYTAEVTDGTLKVHFTDPAIT--GAYRIAYTTAV----- 286 V +G + L+ + YT D K+ F T A+ + YTT + Sbjct: 403 TVGKNGEIISIDKEHPLVKGTDYTV---DSNGKITFIGKYATTDQAFNVVYTTTIDESSF 459 Query: 287 -VSDTRSSFTNTASFAGDGREPVSSSATVTIERGGSLNKLATNYEWGKQVISWAIEYNYN 345 + SF NTA+ DG+ + SA+VT + G + K Q+ +W IEYNYN Sbjct: 460 PEKEGAVSFKNTATL-NDGKTDTNESASVTAQYKGPIKKNGPFTTGNDQIYNWNIEYNYN 518 Query: 346 NKAIPQGSGVLTDLFNNSQELVPGSVKVYPVTLNSSGTAVKGTALSENVDYTVTEATGQG 405 K GS + D +++ ELV GSVK+Y +T +S+G +KG L E DY + + Sbjct: 519 EKNHKAGS-FIEDTMSDAIELVNGSVKLYKITFDSNGKEIKGAQLKEGEDYKLVQDPDNP 577 Query: 406 KKGFKLEFLHDISSAFRIEYKTKSADRVLTDTTISNTVS-DSTYSVEASQLIRSAIIYKN 464 +K FK+EF+ DI A ++EY+TK D V + TI N+V+ D+ + E+ I KN Sbjct: 578 QK-FKIEFITDIDYAVKVEYQTKVKDIVDGNVTIDNSVTTDTGDNSESGGNATQQGIVKN 636 Query: 465 LSG-VDYKNHTTDWKITLNGDGYPMNNVVVTDTFPQGGQKFIPES--VVVRNASGTVLGA 521 + G +DY+N WKI +N GY M N + D +G F+ + ++ + A VL Sbjct: 637 IDGDIDYENREIPWKIDINSPGYWMENWSLEDKMSEG-LTFLENTFQIIDKTAGNKVLSP 695 Query: 522 SAYTLEYNSPVKPNAGFKVKFTSPV-SGT---HTIAYRTEFSNDWLYGNTDN-----FVN 572 + YTL +K AGF V F SP+ GT + I Y+T+F + + + FVN Sbjct: 696 TEYTL-----IKTTAGFSVSFNSPLKEGTDHKYQIKYKTKFDTSVIDNGSGHEGDIKFVN 750 Query: 573 NARIDWVGGDGKAQWTEAKGLFIPRAEVKNNGFKAGAYNARYKLFAWTLGINYNSKVIAD 632 +A + W +G F P + NG K+G+YNA K WT+ N+N + +++ Sbjct: 751 DASMTWKDKNGGDHTNNDHKEFKPIPPFQYNGQKSGSYNATSKKITWTIAANFNQQELSN 810 Query: 633 PVITDILTSGQIMADGSLRVFNMNIDANGEPSRGSEIPKNAYTYTVGTGNELKVTFKDAI 692 ITD ++ Q GS +V+ I+ NG + G+E+ + V + +KV D Sbjct: 811 ASITDPISDDQNYVSGSAKVYEATINKNGTYTLGAEVTSDMGIKIVESKGSVKVELPDGS 870 Query: 693 SSPYYVVFNTTMQGQLIGPK-VDNTAKLLDGTRKVSKDLFASVNIPYGGEYVYKNGVQ-- 749 + Y ++F T+++G LI K N A + + +S DL ASV + GE+V K+G Q Sbjct: 871 TKAYVLIFETSLEGNLINQKEYKNKATFTN--KDISHDLSASVTPAHQGEFVTKDGSQSS 928 Query: 750 -NGDKLDWTIAINRSQSTIKNAVLTDIPSRNQILLPDSFHLYPAYAETNGELIKGGPELV 808 + + ++W + +N SQST+KN +TD PS NQ ++ +Y + +G + + ++ Sbjct: 929 TDSNYVNWKLTVNASQSTLKNVEVTDNPSSNQYIVAKDILIYGTSIDASGNITENKNIIL 988 Query: 809 RD-SDYTLRVITDEG-GKQSFVLSFLHDISYAHILEYKSLIVANTGEKLV-NTVNLTGTN 865 DY++ + TD G Q+ + FL +I+ A+++EY++LI ++ +V N ++TG N Sbjct: 989 EQGKDYSVDIQTDNSTGAQTVKIKFLSEINTAYVVEYRALITSDKANDVVTNQAHITGDN 1048 Query: 866 VERVTQETTREIXXXXXXXXXXXXXXXXXLAVQKLDAADSQLLLAGATFELYRL--NGSE 923 + + Q+ +++ L +K+ ++ LAGA +L+ + +G + Sbjct: 1049 EKIIEQDVEKDVPVTNHNGSANGSKGSVTL--EKVGPGKAK--LAGAHLQLWSIGTDGKK 1104 Query: 924 RVLINTRTTDAAGSAVFNNIWLGSYVLIETAAPAGYALD 962 LI TD G N+ + Y+LIET AP GY LD Sbjct: 1105 DKLIREGDTDKNGDLKLGNLRVTDYLLIETKAPTGYTLD 1143 >lin2282 [M] COG4932 Predicted outer membrane protein Length = 1806 Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 247/977 (25%), Positives = 402/977 (41%), Gaps = 106/977 (10%) Query: 64 GSSVKLDYTWALPNGHGYVDGDTFAFQLPAQFELFN-DINGSLV-SDDGEVGSFTVSQST 121 GS V L+ +A +G Y GDTF LP F N +++G+ + S + E +T+ T Sbjct: 180 GSGVVLNMNFAF-SGKNYKAGDTFTTVLPDAFNFGNKNLSGNFLPSTEAE---WTLDVKT 235 Query: 122 HQVLMTFNNYIETHDNVQG---TLSINTQFDKKVISGSTVQEIVFPVNGGTQTIVVNFKP 178 ++ +TF D +Q ++I+T F + T+QE+VF G + P Sbjct: 236 RELTITF-----LKDGIQEGDYDVNISTAFKVFTSTEETIQEVVFKTAGKDTVYQIEVVP 290 Query: 179 SVG--STIEKKGVSGGFN--ADHIDWTVDVNKKLERVAGAVVTDPIPEGLALDSTVTLAV 234 V +T+ G N +D ++ K+ + + D G T+ V Sbjct: 291 VVTYPTTVSVTANPGVVNPTKGQVDAKFNLTKEKDAKGELKLNDYASGGTTTIDKDTIKV 350 Query: 235 YALGVQLDGTV--TVGALLDSSKYTAEVTDGTLKVHFTDPAITGAYRIAYTTAV--VSDT 290 Y+ V GT T L++ + YT + L V Y++ Y + SD+ Sbjct: 351 YSSDVSAGGTFIGTKKLLVEGTDYTLTYSSTALVVSLNGGLAGKGYQVTYDRTINKPSDS 410 Query: 291 RSSFTNTASFAGDGREPVSSSATVTIERGG--SLNKLATNYEWGKQVISWAIEYNYNNKA 348 S + A GD ++S+ V + L K AT Y Q I W I +NY+ Sbjct: 411 LSYMSTQAYTVGDSGILSTNSSYVYLAMTNYKHLEKKAT-YNGTTQSIDWVINFNYDQDE 469 Query: 349 IPQGSGVLTD-LFNNSQELVPGSVKVYPVTLNSS-GTAVKGTALSENVDYTVTEATGQGK 406 I + VLTD L +N E V S+K+ VT N++ G + G+ S D+T + + G Sbjct: 470 ISPTT-VLTDVLADNDVEYVADSLKIKRVTFNTTTGVPIIGSDASS--DWTTSTISNNG- 525 Query: 407 KGFKLEFLHDISSAFRIEYKTKSADRVLTDTTISNTVSDST-YSVEASQLIRSAIIYKNL 465 F L + + ++A++I Y TK D D I N ++D S +A+ I+ ++ K Sbjct: 526 -NFNLTYKNTNTNAYQITYSTKITD--FKDRKIKNEITDENGVSADATIAIQPDLLKKEA 582 Query: 466 SGVDYKNHTTDWKITLNGDGYPMNNVVVTDTFPQGGQKFIPESVVVR----NASGTVLGA 521 +DY N+T WKIT N D M+N+ +TD F G + +S VR N + VL Sbjct: 583 GSIDYFNNTMSWKITANSDKIKMDNLNITDKFSTGIKSL--KSYTVRAYTDNFTSVVL-T 639 Query: 522 SAYTLEYNSPVKPNAGFKVKFTSPVSGTHTIAYRTEFSNDWLYGNTDNFVNNARIDWVGG 581 N V P AGF ++ + T +N L T N A I + G Sbjct: 640 EGKDFTINENVTP-AGFYIQLIGDYASTDKKIVVDIVTNIDLSDVTKTIDNKAFISYYDG 698 Query: 582 DGKAQWTEAKGLFIPRAEVKNNGFKAGAYNARYKLFAWTLGINYNSKVIADPVITDILTS 641 E P A++ NG K GAYN+ W + N +K + + D + + Sbjct: 699 GTIKYVEEITASATPDAKMMTNGGKYGAYNSTTGNIDWIVSANAMAKSYDNLIFDDTIPT 758 Query: 642 GQIMADGSLR---------VFNMNIDANGEPSRGSEIPKNAYTYTVGTGNELKVTFKDAI 692 G +GSL+ + ++ I N + KN T TGN++ + F + Sbjct: 759 GLTYVEGSLQYRNVESSTEMMSLQIPLNSTGTLAKAGDKNYPTKVDTTGNKIHLEFANLD 818 Query: 693 SSPYYVVFNTTMQGQLIGPK-VDNTAKLLD-GTRK-------VSKDLFASVNIPYGGEYV 743 ++ ++ ++T K V N A++ D GT K + +F ++ + Sbjct: 819 NTRVFIKYSTKPDENWYFYKYVTNIAEVTDNGTDKHTYSYQAYASKVFNAMTKTASIDST 878 Query: 744 YKNGVQNGDKLDWTIAINR--SQSTIKNAVLTDIPSRNQI---LLPDSFHLYPAYAETNG 798 Y N K++WT+ +N I N +TD ++ SF + ET G Sbjct: 879 YNN------KVNWTVTLNNISKDRPINNPTITDTMKNGTTGAQVVKSSFRV---INETTG 929 Query: 799 ELIKGGPELVRDSDYTLRVITDEGGKQSFVLSFLH-------DISYAHILEYKSLIVANT 851 + I DS Y TD + F + F ++Y+ + S +++NT Sbjct: 930 DDI--------DSKYYDITFTD----KDFTIQFKDYKATDPIKVTYSTV-SLMSGLISNT 976 Query: 852 GEKLVNTVNLTGTNVERVTQETTREIXXXXXXXXXXXXXXXXXLAVQKLDAADSQLLLAG 911 T + ++ + T I L + K+D D+ L G Sbjct: 977 A----TTASPDYGSLPMSYKSRTTNISPAFTIGSGSGTATIGSLEITKVDKKDNTKKLTG 1032 Query: 912 ATFELYRLNGSERVLINTRTTDAAGSAVFNNIWLGSYVLIETAAPAGYALDTREYP---- 967 A F+LY G + TTD+ G V + + G Y L+ETAAP GY + + EY Sbjct: 1033 AKFQLYTPEGDKAG--QEATTDSEGKIVMDGLQSGKYKLVETAAPTGYTI-SDEYKDGKE 1089 Query: 968 VTIGSSATINLTVLNTK 984 +TI + ++T+ NT+ Sbjct: 1090 ITITADVATSVTIENTE 1106 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 172/758 (22%), Positives = 290/758 (38%), Gaps = 144/758 (18%) Query: 275 TGAYRIAYTTAVVSDTRSSFTNTASFAGDGREPVSSSATVTIERGGSLNKLATNYEWGKQ 334 T AY+I Y+T + N + VS+ AT+ I+ L K A + ++ Sbjct: 536 TNAYQITYSTKITDFKDRKIKNEIT----DENGVSADATIAIQPD-LLKKEAGSIDYFNN 590 Query: 335 VISWAIEYNYNNKAIPQGSGVLTDLFNNS-QELVPGSVKVYPVTLNSSGTAVKGTALSEN 393 +SW I N+ I + +TD F+ + L +V+ Y S L+E Sbjct: 591 TMSWKI--TANSDKIKMDNLNITDKFSTGIKSLKSYTVRAYTDNFTS-------VVLTEG 641 Query: 394 VDYTVTEATGQGKKGFKLEFLHDISSAFRIEYKTKSADRVLTDTTISNTVSDSTYSVEAS 453 D+T+ E GF ++ + D +S + +++ D + +SD T +++ Sbjct: 642 KDFTINENVTPA--GFYIQLIGDYASTDK---------KIVVDIVTNIDLSDVTKTIDNK 690 Query: 454 QLIR-------------------SAIIYKNLSGVDYKNHTT---DWKITLNGDGYPMNNV 491 I A + N N TT DW ++ N +N+ Sbjct: 691 AFISYYDGGTIKYVEEITASATPDAKMMTNGGKYGAYNSTTGNIDWIVSANAMAKSYDNL 750 Query: 492 VVTDTFPQGGQKFIPESVVVRNASGTV-----------LGASAYTLEYNSPVKPNA-GFK 539 + DT P G ++ S+ RN + G A + N P K + G K Sbjct: 751 IFDDTIPTG-LTYVEGSLQYRNVESSTEMMSLQIPLNSTGTLAKAGDKNYPTKVDTTGNK 809 Query: 540 V--KFTSPVSGTHTIAYRTEFSNDWLYGNTDNFVNNARIDWVGGDGKAQWTEAKGLFIPR 597 + +F + + I Y T+ +W + +V N I V +G + T + + + Sbjct: 810 IHLEFANLDNTRVFIKYSTKPDENWYFYK---YVTN--IAEVTDNGTDKHTYSYQAYASK 864 Query: 598 AEVKNNGFKAGAYNARYK-LFAWTLGINYNSK--VIADPVITDIL---TSGQIMADGSLR 651 V N K + ++ Y WT+ +N SK I +P ITD + T+G + S R Sbjct: 865 --VFNAMTKTASIDSTYNNKVNWTVTLNNISKDRPINNPTITDTMKNGTTGAQVVKSSFR 922 Query: 652 VFNMNIDANGEPSRGSEIPKNAYTYTVGTGNELKVTFKD-AISSPYYVVFNTTMQGQLIG 710 V N + G +I Y T T + + FKD + P V ++T L+ Sbjct: 923 VIN--------ETTGDDIDSKYYDITF-TDKDFTIQFKDYKATDPIKVTYSTV---SLMS 970 Query: 711 PKVDNTAKLLDGTRKVSKDLFASVNIPYGG-EYVYKNGVQNGDKLDWTIAINRSQSTIKN 769 + NTA + + YG YK+ N +TI +TI + Sbjct: 971 GLISNTA--------------TTASPDYGSLPMSYKSRTTNISPA-FTIGSGSGTATIGS 1015 Query: 770 AVLTDIPSRN--QILLPDSFHLYPAYAETNGELIKGGPELVRDSDYTLRVITDEGGKQSF 827 +T + ++ + L F LY + K G E DS+ + + + GK Sbjct: 1016 LEITKVDKKDNTKKLTGAKFQLYTPEGD------KAGQEATTDSEGKIVMDGLQSGKYKL 1069 Query: 828 VLSFLHDISYAHILEYKSLIVANTGEKLVNTVNLTGTNVERVTQETTREIXXXXXXXXXX 887 V + Y EYK G+++ T ++ + VT E T + Sbjct: 1070 VET-AAPTGYTISDEYKD------GKEITITADVATS----VTIENTEQTGSA------- 1111 Query: 888 XXXXXXXLAVQKLDAADSQLLLAGATFELYRLNGSERVLINTRTTDAAGSAVFNNIWLGS 947 +QK D+ ++ ++GA FEL +G++ + TDA G N++ G Sbjct: 1112 --------VLQKEDSV-TKDAISGAEFELQTADGTK--VSENLVTDADGKIEVNDLAPGD 1160 Query: 948 YVLIETAAPAGYALDT--REYPVTIGSSATINLTVLNT 983 Y +ET AP GY LD ++ V +A I +T NT Sbjct: 1161 YQFVETKAPTGYVLDATPTKFTVEFNQTAAIVVTKENT 1198 >lin0203 [M] COG4932 Predicted outer membrane protein Length = 586 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 149/309 (48%), Gaps = 25/309 (8%) Query: 4 KRISVALVVLMLVVQYAYSIGFSMKATAAGIENDRDIITSVSMAVYGPDGQTVTG-SVYD 62 K+I +AL+ ++L+ + F AT G + SV + DG T YD Sbjct: 12 KKIGLALLSVILLANVLFQTNFVKAATDYG----SSFLQSVEL--LDADGNPTTDFGYYD 65 Query: 63 VGSSVKLDYTWALPNGHGYVDGDTFAFQLPAQFELFNDINGSLVSDDGEV-GSFTVSQST 121 SV++ YTWA+PN GDT F LP + ++ D++ SL G V G+ ++ T Sbjct: 66 ---SVQVHYTWAIPNSSNVKAGDTMQFVLPPELQIVTDLDFSLKDHKGNVVGNVVATKDT 122 Query: 122 HQVLMTFNNYIETHDNVQGTLSINTQFDKKVISGSTVQEIVFPVNGGTQTIVV------N 175 +V++TF +++E + +V G L + +DK ++ G+ +VFPVNG T+TI V Sbjct: 123 GKVVITFTDFVEKNSDVSGYLDFWSNWDKSLVEGNEKVPLVFPVNGTTETITVEVGGKNQ 182 Query: 176 FKPSVGSTIEKKGVSGGFNADHIDWTVDVNKKLERVAGAVVTDPIPEGLALDSTVTLAVY 235 P+ T+ K G + N + I W V VN E + AV D + +D AV+ Sbjct: 183 IDPT--ETLYKYGWANAKNPELIQWVVRVNYAKENIQNAVYEDFVGPKQVIDFNSIQAVH 240 Query: 236 ALGVQLDGTVTVGALLDSSKYTAEVTDGTLKVHFTDPAITGAYRIA-YTTAVVSDTRSSF 294 D T GA + SS + TDG KV+ + +T + +I+ YTT+ + S+ Sbjct: 241 G-EFDPDDNFTPGAAVPSSDII-QTTDG-FKVNLGN--LTDSVKISYYTTSTDNGASPSY 295 Query: 295 TNTASFAGD 303 TN GD Sbjct: 296 TNKGKLTGD 304 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 80,132,419 Number of extensions: 3470292 Number of successful extensions: 6566 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 6456 Number of HSP's successfully gapped: 16 Length of query: 1180 Length of database: 38,378,431 Length adjustment: 118 Effective length of query: 1062 Effective length of database: 24,769,019 Effective search space: 26304698178 Effective search space used: 26304698178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 122 (51.6 bits)