BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0011.p (328 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 394 e-109 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 341 9e-94 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 231 1e-60 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 227 2e-59 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 214 1e-55 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/304 (62%), Positives = 242/304 (79%) Query: 25 GVSLSWKTLKAQKQLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVGLQQ 84 G+ L +K QK L+ MS+P ++LIIF YVP++GW +AFQ++RPA Q+W G + Sbjct: 34 GIKLFFKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKH 93 Query: 85 FKFLFSDDTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYLPHF 144 F FLF+D F VLRNT+AMS INLVLG VTAIGLA+LLNE++ FKR VQ+ISY+PHF Sbjct: 94 FTFLFTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHF 153 Query: 145 LSMVIAAGIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEVGWG 204 LS V+AAG+VS +LSI+ GI+N+VLMKL +I +PIMWL G+YFWGIIGAS+VWK VGW Sbjct: 154 LSWVVAAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWN 213 Query: 205 TIIYLAAITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAGFEL 264 TIIYLAAIT ID YEAA IDGA R Q++ YITLPG++ VILLIMN+G+IL++GFE Sbjct: 214 TIIYLAAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEA 273 Query: 265 QYLLGNGLTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKRLGE 324 QYLL N + +D+++ +DIFV++YG+ MGN+SLATAAGIFKT+VS I +F AN++AKRLGE Sbjct: 274 QYLLMNPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGE 333 Query: 325 ERLL 328 RL Sbjct: 334 ARLF 337 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 341 bits (875), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 155/297 (52%), Positives = 223/297 (75%) Query: 32 TLKAQKQLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVGLQQFKFLFSD 91 TLK QK L MS+P ++++FNY P+WGW MAFQN+RP +SF +QEWVGLQ F LF D Sbjct: 23 TLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQD 82 Query: 92 DTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYLPHFLSMVIAA 151 + F LVLRNT+AMS + L++G I A+LLNE++ FKR VQ++SYLPHF+S V+ A Sbjct: 83 NRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVA 142 Query: 152 GIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEVGWGTIIYLAA 211 GIV+ LSIDGGIVN +LM + P+ ++++G++FW I+ S++WKE+GW +II+LAA Sbjct: 143 GIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAA 202 Query: 212 ITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAGFELQYLLGNG 271 + IDP LYEAA +DGA R++++ +ITLPGI+ T +++LI++IGH++ GFE Q+LLGN Sbjct: 203 MAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNP 262 Query: 272 LTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKRLGEERLL 328 L VDYS+ +D++ + YGL +G YS TA GIF ++V +IL+F+AN + KR + ++ Sbjct: 263 LVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSVM 319 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 192/305 (62%), Gaps = 3/305 (0%) Query: 25 GVSLSW-KTLKAQKQLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVGLQ 83 G +SW LK K L + +P LY +IF Y+P+WG L+AF++Y P + F + EWVG Sbjct: 16 GKGISWMAALKRDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFD 75 Query: 84 QFKFLFSDDTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYLPH 143 FK F + F +LRNT+ ++ ++L+ + LALLLNE++ +KR +Q+ Y+PH Sbjct: 76 YFKDFFMNPDFFRLLRNTLMLASLDLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPH 135 Query: 144 FLSMVIAAGIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEVGW 203 F+S I I ++D G++N ++M L + I +LS+ +F +I ++WKE GW Sbjct: 136 FVSWTIVVSITFVFFTVDTGVINKLIMSL--TGEQISFLSDADWFRPMIVMQSIWKETGW 193 Query: 204 GTIIYLAAITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAGFE 263 GTI++LAA+ ++D YEAA +DGA RF++M +ITLP I++T ++LLI+ IG L+ GFE Sbjct: 194 GTILFLAALATVDQEQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFE 253 Query: 264 LQYLLGNGLTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKRLG 323 YL+ N L + D +V G+ G YS +TA G+FK++V +IL+F AN +AK+ Sbjct: 254 QVYLMTNSLNRSVADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFD 313 Query: 324 EERLL 328 +E L Sbjct: 314 QEGLF 318 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 31 KTLKAQKQLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVGLQQFKFLFS 90 K + K L M +P +Y +IF YVP+WG ++AFQ+Y+P + EWVG + F+ LF+ Sbjct: 30 KRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFT 89 Query: 91 DDTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYLPHFLSMVIA 150 + TF +LRNT+ + NL+ I LA+LLNEI+L FKR VQ++ Y+PHF+S VI Sbjct: 90 EPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIV 149 Query: 151 AGIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEVGWGTIIYLA 210 + + DGG++N ++ + + +L +F + +W+E GW TIIY A Sbjct: 150 VSLTYVLFTTDGGVINEIIYSI--TGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFA 207 Query: 211 AITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAGFELQYLLGN 270 AI +IDPSLYEAA +DGA RF+++ +ITLP I++ V+LLI+ IG IL+ GFE +L+ N Sbjct: 208 AIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLN 267 Query: 271 GLTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKRLGEE 325 + + ++ D +V GL G +S +TA G FK+IV +I+V +AN +AK+ GEE Sbjct: 268 AMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEE 322 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 187/304 (61%), Gaps = 9/304 (2%) Query: 31 KTLKAQK-------QLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVGLQ 83 + LK QK QL + +P + +IF Y P++G +MAFQ+Y+P + F EWVGLQ Sbjct: 15 RKLKKQKWNFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQ 74 Query: 84 QFKFLFSDDTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYLPH 143 F +F D V+ NT+ +S + ++ G + I +ALLLNE+ KR VQ+I YLP+ Sbjct: 75 HFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPY 134 Query: 144 FLSMVIAAGIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEVGW 203 FLS VI GI+ LS DGGIVN L + DPI +L +F + S++WKE G+ Sbjct: 135 FLSWVILGGILIDVLSPDGGIVNQALGLFGI--DPIFFLGSNDWFRTTVVISDLWKETGF 192 Query: 204 GTIIYLAAITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAGFE 263 TI++LAAIT+++P+LYEAA +DGA R+++ +ITLP + +++ +++G+IL+AGF+ Sbjct: 193 NTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFD 252 Query: 264 LQYLLGNGLTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKRLG 323 + L N L ID +V + L G++S TA G+FK+++S++L+ I +A + Sbjct: 253 QIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKYA 312 Query: 324 EERL 327 R+ Sbjct: 313 NWRI 316 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.142 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,816,338 Number of extensions: 842507 Number of successful extensions: 3715 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 3610 Number of HSP's successfully gapped: 153 Length of query: 328 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 221 Effective length of database: 26,037,693 Effective search space: 5754330153 Effective search space used: 5754330153 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)