BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0010.p (303 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 182 7e-46 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 181 2e-45 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 179 5e-45 BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 174 2e-43 lin2116 [G] COG0395 ABC-type sugar transport system, permease co... 172 5e-43 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 104/290 (35%), Positives = 164/290 (56%), Gaps = 12/290 (4%) Query: 15 VFHTINTIFMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTLENYRAVFISGT 74 VF N +F+ V +T+ PFL +A SF ++ +++P+ +TL+ Y+ VF + T Sbjct: 15 VFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPT 74 Query: 75 IYHAAFISVSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILTMYFNAGLIPNYF 134 + +S+ T++ T + +F T +AY LA+ R + L I +M F+ G+IP Y Sbjct: 75 FLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYL 134 Query: 135 LIKNMGLLHNFMVYILPSLVSAFNLIIMRTYIRGLPFSLTESAKIDGAGEFRIFWKIIFP 194 ++K++GLL + ILP ++ FNLII++ + + LP L ESAKIDG E +FW+I P Sbjct: 135 VVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALP 194 Query: 195 LCTPVLATVALFIAVGSWNAWFDTFLYASSDLKLS-TLQYEMMKMLGSIMSANNDPSMLA 253 L PV+AT ALF AVG WN +F LY + K + + +L + + N D Sbjct: 195 LSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLTATNGD----- 249 Query: 254 GNQNNQVQSLVTPAS-MRSAITIVTAVPILFVYPFLQKYFVVGLNLGSVK 302 +Q+ V P ++ A+ ++ +PIL VYPFLQK+F G+ +GSVK Sbjct: 250 -----TMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 166/281 (59%), Gaps = 9/281 (3%) Query: 23 FMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTLENYRAVFISGTIYHAAFIS 82 F+L + + PF+ +A SF + ++ L P ++L+ YR +F + IY + +S Sbjct: 13 FLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLLVS 72 Query: 83 VSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILTMYFNAGLIPNYFLIKNMGLL 142 V T+I T + +FL++++AY L++ I R+ + L + TM F+ G+IP + ++K++GLL Sbjct: 73 VFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLL 132 Query: 143 HNFMVYILPSLVSAFNLIIMRTYIRGLPFSLTESAKIDGAGEFRIFWKIIFPLCTPVLAT 202 ++ ILP+ ++AFNLII++ + + +P SL ESAKIDG + IF+KI+ PL P +AT Sbjct: 133 DSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLPLSLPAIAT 192 Query: 203 VALFIAVGSWNAWFDTFLYASSDLKLSTLQYEMMKMLGSIMSANNDPSMLAGNQNNQVQS 262 ++LF AV WN + LY + K + + +L I+ + S + G+ + Sbjct: 193 ISLFYAVTYWNTYMTAILYLNDSAK-----WPIQVLLRQIVIVS---SGMQGDMSEMGSG 244 Query: 263 LVTPA-SMRSAITIVTAVPILFVYPFLQKYFVVGLNLGSVK 302 P +++ A+ +V +P+L VYPF+QK+F G LGSVK Sbjct: 245 SPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVK 285 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 170/290 (58%), Gaps = 10/290 (3%) Query: 15 VFHTINTIFMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTLENYRAVFISGT 74 VF+ N +F+ + PF+ +A SF + L L+P ++L+ YR +F + Sbjct: 11 VFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDI 70 Query: 75 IYHAAFISVSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILTMYFNAGLIPNYF 134 I+ + IS+ T++ T +FLT+++AY L++ R+ + L + TM F+ G+IP + Sbjct: 71 IFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFL 130 Query: 135 LIKNMGLLHNFMVYILPSLVSAFNLIIMRTYIRGLPFSLTESAKIDGAGEFRIFWKIIFP 194 +++++GLL + I+P+ ++AFNLII++ + + +P SL ESAKIDG + IF++I+FP Sbjct: 131 VVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFP 190 Query: 195 LCTPVLATVALFIAVGSWNAWFDTFLYASSDLKLSTLQYEMMKMLGSIMSANNDPSMLAG 254 L P +AT++LF AV WN + LY +D + +Q + +++ IMS+ + G Sbjct: 191 LSMPAIATISLFYAVTYWNTFMQAILYL-NDSSMWPIQVLLRQIV--IMSSG-----MQG 242 Query: 255 NQNNQVQSLVTP--ASMRSAITIVTAVPILFVYPFLQKYFVVGLNLGSVK 302 + V P +++ A+ +V +P+L VYPF+QK+F G LGSVK Sbjct: 243 DLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVK 292 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 174/303 (57%), Gaps = 13/303 (4%) Query: 4 GTKGSSRIEPVVFHTINTIFMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTL 63 G GS+ I HT+ F + +PF+ + +S G + P W+ Sbjct: 30 GFSGSTNI---FMHTLIGTFAFLCI----FPFIYVIIISLTSEQSLAMNGYRIIPSEWSF 82 Query: 64 ENYRAVF-ISGTIYHAAFISVSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILT 122 + YR ++ + ++ A +++ T++ T++ V + + AYA+++ Q+++RK + + T Sbjct: 83 DAYRYLWQMRSEVFRAYGVTIFITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFT 142 Query: 123 MYFNAGLIPNYFLIKN-MGLLHNFMVYILPSLVSAFNLIIMRTYI-RGLPFSLTESAKID 180 M F+ G++P Y ++ +GL ++ ILP V+AF +IIMRT+ R +P ++ ESA+ID Sbjct: 143 MLFSGGMVPFYIVMTQFLGLKNSVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARID 202 Query: 181 GAGEFRIFWKIIFPLCTPVLATVALFIAVGSWNAWFDTFLYASSDLKLSTLQYEMMKMLG 240 GAGEFRIF+KI+ PL P +AT+ALF + WN WF+ L+ D KL LQ +M++ Sbjct: 203 GAGEFRIFFKIVLPLSIPGIATIALFSTLAYWNDWFNALLFI-DDPKLVPLQSLLMRIEN 261 Query: 241 SIMSANNDPSMLAGNQNNQVQSLVTPASMRSAITIVTAVPILFVYPFLQKYFVVGLNLGS 300 ++ + +ML+ +QN+ + + S R A+ ++ +PI YPF QKYFV GL +G Sbjct: 262 NLDFIRQN-AMLS-SQNSALLDSIPQDSARMAMVVIATLPIALSYPFFQKYFVKGLTIGG 319 Query: 301 VKE 303 VKE Sbjct: 320 VKE 322 >lin2116 [G] COG0395 ABC-type sugar transport system, permease component Length = 323 Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 168/288 (58%), Gaps = 11/288 (3%) Query: 21 TIFMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTLENYRAVF-ISGTIYHAA 79 + + F+ + ++PFL + +SF+ + A G L P+ W++E Y ++ + G + + Sbjct: 42 NVMLAFLALICIFPFLYIIVISFSSETSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSY 101 Query: 80 FISVSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILTMYFNAGLIPNYFLIKNM 139 I++ T+I TV V + + +YA+++PQ+ +R++ + + TM F+ G++P Y ++ Sbjct: 102 GITIVVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQF 161 Query: 140 GLLHNFM-VYILPSLVSAFNLIIMRTY-IRGLPFSLTESAKIDGAGEFRIFWKIIFPLCT 197 L N + ILP ++AF ++IMRT+ +R +P + E+A+I+GAGE RIF +++ PL Sbjct: 162 LHLRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSL 221 Query: 198 PVLATVALFIAVGSWNAWFDTFLYASSDLKLSTLQYEMMKMLGSI--MSANNDPSMLAGN 255 P LAT+ALF +G WN WF LY + L LQ +MK+ ++ M N++ + AG Sbjct: 222 PGLATIALFSTLGYWNDWFQASLYIDNP-NLVPLQSLLMKIENNLEFMRQNSEIAYTAGA 280 Query: 256 QNNQVQSLVTPASMRSAITIVTAVPILFVYPFLQKYFVVGLNLGSVKE 303 + Q + A+ +++ +PI YPF QKYF+ GL +G VKE Sbjct: 281 FKSIPQD-----GAKMAMVVISTLPIAITYPFFQKYFISGLTIGGVKE 323 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,107,854 Number of extensions: 759659 Number of successful extensions: 3720 Number of sequences better than 1.0e-05: 154 Number of HSP's gapped: 3545 Number of HSP's successfully gapped: 154 Length of query: 303 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 197 Effective length of database: 26,153,027 Effective search space: 5152146319 Effective search space used: 5152146319 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)