BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0009.p (510 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2109 [T] COG4753 Response regulator containing CheY-like recei... 207 4e-53 BH0793 [T] COG4753 Response regulator containing CheY-like recei... 113 6e-25 SPy1062 [T] COG4753 Response regulator containing CheY-like rece... 108 3e-23 BH1910 [T] COG4753 Response regulator containing CheY-like recei... 104 4e-22 BH2728 [T] COG4753 Response regulator containing CheY-like recei... 102 1e-21 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 207 bits (526), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 152/534 (28%), Positives = 251/534 (47%), Gaps = 40/534 (7%) Query: 1 MLKVLFADDEPIMLEGLRFLVDWEALNYEVCGEALDGEDALELIGSTRPDLVITDVRMPV 60 M KVL ADDE + GL+ L++WE YEV EA +GEDA +L+ +PDLVITD+RMPV Sbjct: 1 MYKVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPV 60 Query: 61 IDGLELIRRTSES-DFQPKFIIFSGYADFEYAKRALKYGVSNYLTKPLDETELTEALQTV 119 DGL+LI++ +E+ F KFII SGY DF YA++A+++G +++ KP+D+ EL AL + Sbjct: 61 FDGLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKL 120 Query: 120 TEQIFKERKASSRRDALSALMQEDMVSRLLMRENTEEEREKGLKTLGISPASRLCCVL-- 177 + +E+ +S D L+ + + L + E R K L I+ +L Sbjct: 121 AATLDQEKATNS--DQEKVLLDQIFIHSLGENKKENEVRRWAAK-LNINNRHFYYYLLLE 177 Query: 178 VQGAAPDSLHMREQVAAMSGKEPLRSI---TV--------YPFTAGSGKHGY-LLVSPQE 225 V + D + EQ KEP+R + TV Y H Y LL++ + Sbjct: 178 VNNLSLDKGFINEQY-----KEPIRKVIRETVARQAATEEYTAIYEQLDHAYGLLITSEH 232 Query: 226 GPALD---RALLTRWMEEMRPLYSTPVFFSASLQHQGPETLNTAYHEALAAELCRPDGPG 282 + L + ++++ + P+ + T+ +Y A + + Sbjct: 233 LKKFNGQIEPLAEKLRKDIQDFTNIPLTVYVGAKTDDLSTIKKSYETANSLRNYKYIFNE 292 Query: 283 GGVAGFFEKQDK---TQMAMLPAELRRSLLQSVTEGKVDHLTDQLGEVFKIFSAEVASSS 339 V F +Q + T L L +L++ + E D + + + ++F F + S Sbjct: 293 KNV--FIHEQTESVDTTYDELNNHLFVTLMEQMEENNSDRIVNIIDKIFSEFQTKKFVPS 350 Query: 340 WIDAFLANVKAELLREITARGGDY-----AQWVQKWFPSRHTASCLPLLXXXXXXXXXXX 394 + + ++++ + A GD AQ + W T L + Sbjct: 351 AVKTSVNRCVHKVMQTVQAMEGDTGKIISAQAMTNWESYNLTFDQLKQVFTKFVLEAAVI 410 Query: 395 XXXXXXXXXXXXXDQIVAAAIEYVRGHYQEKLKLQDIAKHLHVNSAYLGQRFKKYYGSSF 454 ++ Y+ HY E + L+ IA ++N Y+GQ FKK +G F Sbjct: 411 IQELRKENMKSDIYKVKT----YIENHYHENISLKSIASLFYMNPVYMGQLFKKTFGVYF 466 Query: 455 NDYLHEFRIEEAKKLLRRTDMGISDIASRVGYSDADVFAAKFKALNGVTPSVYK 508 +YL + R+ EAKKLLR+TDM + ++A RVG+ D F +F+ +N +TP+ Y+ Sbjct: 467 KEYLLKLRMNEAKKLLRQTDMRVYEVAERVGFGSTDYFVTQFEKINKMTPTEYR 520 >BH0793 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 508 Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 79/123 (64%) Query: 1 MLKVLFADDEPIMLEGLRFLVDWEALNYEVCGEALDGEDALELIGSTRPDLVITDVRMPV 60 M++V+ DDEP++LEGL+ L+DW L YE+ A +G +ALE+ DL+ITD++MP Sbjct: 1 MIRVMLVDDEPLILEGLKHLIDWGQLGYEIVATARNGVEALEIAKYVSFDLLITDIKMPE 60 Query: 61 IDGLELIRRTSESDFQPKFIIFSGYADFEYAKRALKYGVSNYLTKPLDETELTEALQTVT 120 GLELI +E + + I+ SG+ +F + K+ L G+ NYL KP++E EL L V Sbjct: 61 KTGLELIAALNEREKTIRSIVLSGFQEFHFVKQGLTLGIENYLLKPINEKELISTLSHVK 120 Query: 121 EQI 123 E+I Sbjct: 121 EKI 123 Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 57/100 (57%) Query: 410 IVAAAIEYVRGHYQEKLKLQDIAKHLHVNSAYLGQRFKKYYGSSFNDYLHEFRIEEAKKL 469 I+ ++++ H+ + L L+ + H+N YLGQ F++ G SF YL++ RI+ AKKL Sbjct: 404 IIQTVLQHIHQHFSQDLSLKTLGHSFHINPIYLGQLFQREVGCSFTKYLNQLRIDRAKKL 463 Query: 470 LRRTDMGISDIASRVGYSDADVFAAKFKALNGVTPSVYKK 509 L + I +VGY DA F +FK +TP+ ++K Sbjct: 464 LLNSYDRAGQIGKKVGYGDATYFYKQFKKYEAMTPTEWRK 503 >SPy1062 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 262 Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 88/135 (65%), Gaps = 2/135 (1%) Query: 1 MLKVLFADDEPIMLEGLRFLVDWEALNYEVCGEALDGEDALELIGSTRPDLVITDVRMPV 60 M K++ +DE I+ + LR+ +D++AL+ V GEA DG++ LI ++PD+V+TD+ MP+ Sbjct: 1 MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPI 60 Query: 61 IDGLELIRRTSESDFQPKFIIFSGYADFEYAKRALKYGVSNYLTKPLDETELTEALQTVT 120 + ++ T + + II SGYADF A+ A+ YGV +LTKP+++ L E LQT+ Sbjct: 61 MTAFDMFEVTKDQTYAK--IILSGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTII 118 Query: 121 EQIFKERKASSRRDA 135 +I K++ ++ + DA Sbjct: 119 AKIEKQKGSNQKTDA 133 Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Query: 409 QIVAAAIEYVRGHYQEKLKLQDIAKHLHVNSAYLGQRFKKYYGSSFNDYLHEFRIEEAKK 468 ++V +E+V H+Q+K+ +A L + +Y+ Q KK+ +DY++++RI +A + Sbjct: 148 EVVKDILEWVHAHFQDKISTSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQ 207 Query: 469 LLRRT-DMGISDIASRVGYSDADVFAAKFKALNGVTPSVYKK 509 L+++ D+ + +IA VG D F FK G T +K+ Sbjct: 208 LMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYLGQTVKAFKE 249 >BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 506 Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 4/149 (2%) Query: 1 MLKVLFADDEPIMLEGLRFLVDWEALNYEVCGEALDGEDALELIGSTRPDLVITDVRMPV 60 M V+ DDE ++ EGL+ L+ WE + V A +G++ PDL+I D+RMP Sbjct: 1 MYDVMIVDDEAMVREGLKALISWEEYGFRVIDTARNGKEGFTKYRQLSPDLMIVDIRMPE 60 Query: 61 IDGLELIRRTSESDFQPKFIIFSGYADFEYAKRALKYGVSNYLTKPLDETELTEALQTVT 120 +DGL LI D FII SG++DF YAK+AL +YL KPLDE EL ++L+ V Sbjct: 61 VDGLSLIESIRAEDSAIHFIILSGHSDFNYAKKALGCQCDDYLLKPLDEDELIDSLKKVY 120 Query: 121 EQIFKERKASSRRDALSALMQEDMVSRLL 149 +I + + L +QE V +L Sbjct: 121 GRITRHHQVHE----LVERVQEKQVEMVL 145 Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%) Query: 408 DQIVAAAIEYVRGHYQEKLKLQDIAKHLHVNSAYLGQRFKKYYGSSFNDYLHEFRIEEAK 467 D ++ I + Y + L+L+ +A + N AYLG+ FK Y G FN YL + RIE K Sbjct: 396 DLLLRKMIALIHKDYAKNLRLETLASVFNYNRAYLGKLFKNYTGEYFNTYLDKVRIENGK 455 Query: 468 KLLRRTDMGISDIASRVGYSDADVFAAKFKALNGVTPSVYKK 509 +LL++ + ++A ++GY++ D F KFK GV+PS ++K Sbjct: 456 RLLQKG-YKVYEVAEKIGYANVDYFHRKFKKYVGVSPSTFRK 496 >BH2728 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 510 Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 7/208 (3%) Query: 1 MLKVLFADDEPIMLEGLRFLVDWEALNYEVCGEALDGEDALELIGSTRPDLVITDVRMPV 60 M VL DDE ++ +G+ DWE +++ GEA +G+DALELI P +V+TD+ MPV Sbjct: 1 MCNVLIVDDEKLIRQGIINFFDWEKEGFQIVGEAANGKDALELISKNEPHIVMTDIVMPV 60 Query: 61 IDGLELIRRTSESDFQPKFIIFSGYADFEYAKRALKYGVSNYLTKP-LDETELTEALQTV 119 +DG++L++R + + I+ S + +FEY + GV++Y+ KP L+E +L + L V Sbjct: 61 MDGIDLVKRVKRDFPEVEIIVLSSFEEFEYVRSTFHSGVADYILKPRLNEKDLLKTLSEV 120 Query: 120 TEQIFKERKASSRRDALSALMQEDMVSRLLMRENTEEEREKGLKTLGISPASRLCCVLV- 178 +I K S A+ ++ D ++L + + G K P RL + Sbjct: 121 RGKIPALAKVDSPSRAVPSI--SDQFEKILNGHAPLSQDDTGEKRFPKGPY-RLAVITPI 177 Query: 179 --QGAAPDSLHMREQVAAMSGKEPLRSI 204 Q H+ E+ A++G + + SI Sbjct: 178 EEQDVHRRKQHLDEREQAITGIDVVCSI 205 Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 59/99 (59%) Query: 411 VAAAIEYVRGHYQEKLKLQDIAKHLHVNSAYLGQRFKKYYGSSFNDYLHEFRIEEAKKLL 470 + + Y+ H+ E L L +A + H N +YL F++++ F++YL++ RI +AK+ L Sbjct: 402 IQKMLAYIEEHHSEPLSLSQLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKEWL 461 Query: 471 RRTDMGISDIASRVGYSDADVFAAKFKALNGVTPSVYKK 509 + + + IS+I + VGYSD F FK G+ PS Y++ Sbjct: 462 KSSTIPISEIYALVGYSDHSYFCKVFKKRTGMPPSRYRR 500 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,001,291 Number of extensions: 1424869 Number of successful extensions: 5475 Number of sequences better than 1.0e-05: 330 Number of HSP's gapped: 5567 Number of HSP's successfully gapped: 342 Length of query: 510 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 399 Effective length of database: 25,576,357 Effective search space: 10204966443 Effective search space used: 10204966443 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)