BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0007.p (506 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2109 [T] COG4753 Response regulator containing CheY-like recei... 181 3e-45 SPy1587 [T] COG4753 Response regulator containing CheY-like rece... 149 2e-35 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 127 5e-29 BH1910 [T] COG4753 Response regulator containing CheY-like recei... 104 3e-22 BH1123 [T] COG4753 Response regulator containing CheY-like recei... 99 2e-20 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 137/529 (25%), Positives = 243/529 (45%), Gaps = 34/529 (6%) Query: 1 MYKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPE 60 MYKV+LADDE F GL++L +WE+ G+EV +NGE+A + PDLVITDIRMP Sbjct: 1 MYKVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPV 60 Query: 61 IDGLELIRRVRSLDMEQPIFIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKVLTDI 120 DGL+LI++V FI++SGY +F YA+ A+R+G ++LKP+ E + L + Sbjct: 61 FDGLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKL 120 Query: 121 TDELEL-RLKQTMQQSMLASRLLPLAIARMLEGHWAEPDEETAEQMDRLDEEAAGWTYVH 179 L+ + + Q+ +L ++ I + E A +++ + + + Sbjct: 121 AATLDQEKATNSDQEKVLLDQIF---IHSLGENKKENEVRRWAAKLNINNRHFYYYLLLE 177 Query: 180 VEGHSSNITELCRELAGPAGAMFIDLPGDQA----------------GLVVESS--SPAA 221 V S + + + P + + QA GL++ S Sbjct: 178 VNNLSLDKGFINEQYKEPIRKVIRETVARQAATEEYTAIYEQLDHAYGLLITSEHLKKFN 237 Query: 222 GLAEELYARLTR-----SGVKGSVSIGPSVRSLRELPVSYREAAXXXAAARHYFYSDGCG 276 G E L +L + + + +V +G L + SY A + R+Y Y Sbjct: 238 GQIEPLAEKLRKDIQDFTNIPLTVYVGAKTDDLSTIKKSYETA----NSLRNYKYIFNEK 293 Query: 277 PVDSASEAEG-QVNYTLPSAELIEEIISAVERLHEQKAAEKLGELFSVFRENRTDPGVVQ 335 V + E Y + L ++ +E + + + ++FS F+ + P V+ Sbjct: 294 NVFIHEQTESVDTTYDELNNHLFVTLMEQMEENNSDRIVNIIDKIFSEFQTKKFVPSAVK 353 Query: 336 MTGMDIMLRSMELLKEFGGADDQWIGMLDFFRTEPKSL--EDLQITLETALGTSMNYIRQ 393 + + + M+ ++ G + I E +L + L+ + + I++ Sbjct: 354 TSVNRCVHKVMQTVQAMEGDTGKIISAQAMTNWESYNLTFDQLKQVFTKFVLEAAVIIQE 413 Query: 394 HKERNSEHPLIRVECFLREHYSEHLTVKEIAEHFYINPVYLGQAFIKKHGISILEYIHNL 453 ++ N + + +V+ ++ HY E++++K IA FY+NPVY+GQ F K G+ EY+ L Sbjct: 414 LRKENMKSDIYKVKTYIENHYHENISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKL 473 Query: 454 RIEAAKKRLIDTHDTVRSIVESVGYVHYHHFLREFEKRTALKPVQFRAQ 502 R+ AKK L T V + E VG+ +F+ +FEK + P ++R + Sbjct: 474 RMNEAKKLLRQTDMRVYEVAERVGFGSTDYFVTQFEKINKMTPTEYRNK 522 >SPy1587 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 494 Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 134/518 (25%), Positives = 244/518 (47%), Gaps = 56/518 (10%) Query: 1 MYKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPE 60 MYKV+L DDE L+GL + DW+ LGFEV +G+EALA + + D++I+D+ MP Sbjct: 1 MYKVLLVDDEYMILQGLTMIIDWQALGFEVVQTARSGKEALAYLTQYPVDVMISDVTMPG 60 Query: 61 IDGLELIRRVRSLDMEQPIFIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKVLTDI 120 + GL+LI ++ Q ++LSGY EF Y + A+ + YLLKPV AE + Sbjct: 61 MTGLDLIEAAKTYH-PQLQTLILSGYQEFSYVQKAMELETKGYLLKPVDKAELQAKMKQF 119 Query: 121 TDELELRLKQTMQQSMLASRLLPLAIARMLEGHWAEPDEETAEQMDRLDEEAA--GWTYV 178 D L+ + ++++Q LL L + E E+ +Q+ + AA G+T + Sbjct: 120 KDWLDAQQAESIRQEAYHDSLLTLWLTD-------ELSEKEFQQLSQGLPAAALTGFTVL 172 Query: 179 HVEGHSSNITELCRELAGPAGAMF--------IDLPGDQA---GLVVESSSPAAGLAEEL 227 +++ C+E A F + D+ +++ + A +L Sbjct: 173 YLD---------CQEWQAAIDAYFEREGQPFYLKKEEDKKVYLAVLLGKTDQAKAFTYDL 223 Query: 228 YARLTRSGVKGSVSIGPSVRSLRELPVSYREAAXXXAAARHYFYSDGCGPVDSASEAEGQ 287 R +R+ + +G +V + SY + + FY+ P+ A+ + Sbjct: 224 QKRFSRN--MHQLILGETVDDWENVYESYNQ------VLKSLFYNCEVSPI----RAKDK 271 Query: 288 VNYTLPSAELIEEIISAVERLHEQKAAEKLGELFSVFRENRT---DPGVVQMTGMDIMLR 344 LP + L + + + L L +L ++F E +T P V+ L Sbjct: 272 SKIELPESRL--QFFAFNKALMIGDEPTILSKLEAIFDEMKTLNFSPEDVKHVS---FLL 326 Query: 345 SMELLKEFGGADDQWIGMLDFFRT--EPKSLEDLQITLETALGTSMNYIRQHKERNSEHP 402 ++ ++F D + L +T + +S++ + L+ L + N ++R S+ Sbjct: 327 FSDIYRQFPILDK--MTYLSMVKTIHDSQSIDCILRELKKVLDVT-NQNNSPEKRYSDLV 383 Query: 403 LIRVECFLREHYSEHLTVKEIAEHFYINPVYLGQAFIKKHGISILEYIHNLRIEAAKKRL 462 ++C +R+ Y + LT+K IA+ ++N VYLGQ F + S +Y++++RI+ A++ L Sbjct: 384 SETIDC-IRKEYHQELTLKAIADRLHVNGVYLGQCFKNETERSFTQYLNHVRIQKAQQLL 442 Query: 463 IDTHDTVRSIVESVGYVHYHHFLREFEKRTALKPVQFR 500 + T+ ++ I GY H+F++ F+K L P +FR Sbjct: 443 LYTNQSINEIAYETGYNTNHYFIKMFKKLNGLSPKEFR 480 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 132/549 (24%), Positives = 227/549 (41%), Gaps = 74/549 (13%) Query: 1 MYKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPE 60 M V++ DDE EGL+ + + G NG +A+ + + PDL++ DI+MP Sbjct: 1 MINVLIVDDEQIEREGLKLFLK-DRPNIHIVGEASNGRQAIEKALETQPDLMMMDIKMPG 59 Query: 61 IDGLELIRRVRSLDMEQPIFIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKVLTDI 120 +DG++ ++ ++ + + FI++S + FEYAR +RYGV+ YLLKP + L I Sbjct: 60 VDGVQAVKEIKQ-QLPETEFIMVSAFDTFEYAREVMRYGVKEYLLKPTTKEDVLTALDRI 118 Query: 121 TDELELRLKQTMQQSMLASRLLPL-------AIARMLEGHWAEPDEETAEQMDRLDEEAA 173 E+E ++ Q L RL + +I +L H D E E + L E Sbjct: 119 VGEIEQAREEKNDQYKLQQRLEQISSFVQTESILYLLMDHIQ--DYEWMEWNEWLRTEQE 176 Query: 174 GWTYV---HVEGHSSNITELCRELAGPAGAMFIDLPGDQAGLVVESSSPAAGLAE----- 225 G+ V H +G TE + A + + LP G + P L E Sbjct: 177 GYAVVFSFHQQGKEIRKTEKQQWHARIKKEIGLQLPKSTVGPFIGHHLPILMLTENENGM 236 Query: 226 ----------ELYARLTRSGVKGSVSIG-PSVRSLRELPVSYREAAXXX------AAARH 268 +L ++ ++ V G + L SYREA A + Sbjct: 237 TKQEREQVVIQLLHKVKQAVQPAKVKTGVGGIYRLHFFSTSYREALLALDIIYDHKQASY 296 Query: 269 YFYSDGCGPVDSASEAEGQVNYTLPSAELIEEIISAVERLHEQKAAEKLGELFSVFRENR 328 YFY + + + LP E ++I A++ +KA + Sbjct: 297 YFYDKNV---------KIRADEQLP-IERENKLIEAIKSGDGEKALQAFDHYVQAILRCS 346 Query: 329 TDPGVVQMTGMDIMLRSM-----ELLKEFGGADDQWIGMLDFFR-------TEPKSLEDL 376 P + M L+ + LL E G W DF R TE E L Sbjct: 347 KHP----LHDMRKYLQQLFIILGRLLNEMGL---HWETAQDFARFSTVHQVTEHGKSEIL 399 Query: 377 QITLETALGTSMNYIRQHKERNSEHPLIRVECFLREHYSEHLTVKEIAEHFYINPVYLGQ 436 I + +++ + + + ++ ++ +H+ E LT+ ++A+H ++P Y+ + Sbjct: 400 HI---------VRTLQEWRTTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGLSPYYVSK 450 Query: 437 AFIKKHGISILEYIHNLRIEAAKKRLIDTHDTVRSIVESVGYVHYHHFLREFEKRTALKP 496 F ++ ++ EY+ LR+E AK+ L T +++ I +GY ++F R F+K T P Sbjct: 451 LFKERFDLTFSEYVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFKKLTGKSP 510 Query: 497 VQFRAQAQG 505 +R G Sbjct: 511 SDYRKSING 519 >BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 506 Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 9/156 (5%) Query: 1 MYKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPE 60 MY V++ DDE EGL+ L WEE GF V NG+E + SPDL+I DIRMPE Sbjct: 1 MYDVMIVDDEAMVREGLKALISWEEYGFRVIDTARNGKEGFTKYRQLSPDLMIVDIRMPE 60 Query: 61 IDGLELIRRVRSLDMEQPIFIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKVLTDI 120 +DGL LI +R+ D FI+LSG+ +F YA+ A+ YLLKP+ + E L D Sbjct: 61 VDGLSLIESIRAED-SAIHFIILSGHSDFNYAKKALGCQCDDYLLKPLDEDE----LIDS 115 Query: 121 TDELELRLKQTMQQSMLASRL----LPLAIARMLEG 152 ++ R+ + Q L R+ + + + +LEG Sbjct: 116 LKKVYGRITRHHQVHELVERVQEKQVEMVLTELLEG 151 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 128/545 (23%), Positives = 228/545 (41%), Gaps = 75/545 (13%) Query: 1 MYKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPE 60 M+KVV+ DDE + GL+ + W+ LG E G NG L + +SP +V+TDI MP Sbjct: 1 MWKVVIIDDEEHVVRGLKKIISWKALGCECVGEAANGRRGLDIVRETSPHIVLTDIYMPI 60 Query: 61 IDGLELIRRVRSLDMEQPIFIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKVLTDI 120 + GL++I+ +R + + ++LSGY EFE+AR A++ + YL KP + VL + Sbjct: 61 MYGLDMIQILREDGFDGEV-VILSGYSEFEHARKAMQLNITDYLSKPASVDTIETVLKRV 119 Query: 121 TDELELRLKQTMQQSMLAS---RLLPLA----IARMLEGHWAE---PDEETAEQMDRLDE 170 ++LE + +Q L + R PL + +L G P+E A+ D+ Sbjct: 120 INKLEEKQRQQGYLQELTNKVKRYEPLVETEWMKSLLTGRLRNGEIPEEFLAKITKWKDQ 179 Query: 171 E--AAGWTYVHVEGHS----------SNITELCRELAG--PAGAMFIDLPGDQAGLVVES 216 + A TY + ++ ++ RE+ P ++++ ++ L + Sbjct: 180 QHIACSLTYDGPQNKELKPADWYLFRYSVHKMIREVLNGYPIDFRYLEMDAYRSALCLHV 239 Query: 217 SSPAA-------------GLAEELYARLTRSGVKGSVSIGPSVRSLRELPVSYREAAXXX 263 + + + + +Y+ VK +V G +L S+ EA Sbjct: 240 NKSVSEPVLSCMLMEIKDQVEQGIYSSF---NVKTTVHYGRVKEDWTDLSESFHEACMES 296 Query: 264 AA-ARHYFYSDGCG---PVDSASEAEGQVNY--TLPSAELIEEIISAV-ERLHEQKAAEK 316 + Y DG P++S+ + + Y + E++EE + + E + K Sbjct: 297 QSFPLGNPYEDGTRATFPMESSQKLYDAIRYADATRAKEVLEEAVGVLGEVPYSTLVGYK 356 Query: 317 LG-ELFSVFRENRTDPGVV--QMTGMDIMLRSMELLKEFGGADDQWIGML--DFFRTEPK 371 +G E++++ + D G++ +M D L + L K+ G +WI L Sbjct: 357 VGIEIWTIITYSLYDIGILIQEMFDEDFDL-AQHLTKQ--GNWQEWIRFLCEQIEHICYH 413 Query: 372 SLEDLQITLETALGTSMNYIRQHKERNSEHPLIRVECFLREHYSEHLTVKEIAEHFYINP 431 D I + + M YI +H N I E ++ +Y + K + E F Sbjct: 414 QQWDENIKHKQLIEQVMIYIEKHLAENITLQDIADELYISRNYLGQIFKKVVGESF---- 469 Query: 432 VYLGQAFIKKHGISILEYIHNLRIEAAKKRLIDTHDTVRSIVESVGYVHYHHFLREFEKR 491 Y+ LR+E AKK + + + + + E VGYV+ +F F+K Sbjct: 470 ---------------KNYVTRLRMEKAKKMIQEGNFLIYEVSEKVGYVNPAYFTTMFKKY 514 Query: 492 TALKP 496 T P Sbjct: 515 TGYTP 519 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,710,538 Number of extensions: 1509689 Number of successful extensions: 6432 Number of sequences better than 1.0e-05: 178 Number of HSP's gapped: 6526 Number of HSP's successfully gapped: 188 Length of query: 506 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 395 Effective length of database: 25,576,357 Effective search space: 10102661015 Effective search space used: 10102661015 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)