BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0003.p (300 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot... 119 4e-27 lin2267 [K] COG2207 AraC-type DNA-binding domain-containing prot... 92 1e-18 BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing prot... 86 1e-16 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 77 3e-14 BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins 76 7e-14 >CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 295 Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 127/262 (48%), Gaps = 17/262 (6%) Query: 42 HWHDHLEWILITKGSFRVQVGPHSRELMQGELAFVSRPQIHAAYPTEDGSELYAV-VYNE 100 HWH+HL+ T G+ ++ + ++ G +A ++ ++H + + Y + + Sbjct: 36 HWHEHLQIYYFTAGTAYLECAQNKFDVTTGSIAIINSNELHYLESHSNNLKFYTIRIEPT 95 Query: 101 ALLNGMRDLTELQHIRPLLSGEIRLPAFYDTDQPVTRQIRGCIEQIIYSYQSKSPGYELC 160 L + DL + +++ PL I + D QI CI+ I+ Y SK+ GYEL Sbjct: 96 FLFSNKEDLLQTKYLAPLALNRITFKNLIENDL----QILECIKTILKEYSSKNIGYELA 151 Query: 161 IKGGLFSSLGLAYPLAEFTAPP------SKRDRQETGIQPLLIHLSNHFHEPLTVEEAAR 214 +K ++ + Y L + +R R Q + + + E LT+ E A Sbjct: 152 VKANIYQLI--VYLLRGYVDKILNENEFEERKRILNKFQCVFRLIEEKYTEKLTLNELAD 209 Query: 215 ICCVTPNYFCHLFKKNTGKTLIEYVNMLRVHEASRLLQLRRYSIQEVAFRVGFTGLTYFG 274 + ++FC FK+ TGKT +Y+N +R+++++ L+ +I E+A + GF YF Sbjct: 210 CVNFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYLKQTDLNITEIAIKCGFDNNNYFS 269 Query: 275 RIFKQHTSMTPSE----YASHF 292 R+FK+H MTP++ YA HF Sbjct: 270 RLFKKHYDMTPTKYRKLYAGHF 291 >lin2267 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 292 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 133/304 (43%), Gaps = 52/304 (17%) Query: 15 EHTEIPEGLFPINVFHICFPDRS-------IIPPHWHDHLEWILITKGSFRVQVGPHSRE 67 E+ EIPE + FP RS ++ PHWH +E I KGS + V + Sbjct: 3 EYLEIPE-------LNKAFPFRSFVNEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQ 55 Query: 68 LMQGELAFVSRPQIHAAYPTEDGSELYAVVYNEALL---------NG-MRD-LTELQHIR 116 L +GE+ ++ +H + SE + ++ +L NG +R+ LTE+ H+ Sbjct: 56 LNEGEIQIINGGDVHY-FLASPNSERIVIQFDLSLFQEEMQMDGQNGTLREMLTEMAHLS 114 Query: 117 PLLSGEIRLPAFYDTDQPVTRQIRGCIEQIIYSYQSKSPGYELCIKGGLFSSLGLAY--- 173 + + T +++ I I + SPG +K L + +GL Y Sbjct: 115 R------------EWPEETTAKVQSLIRNIHLESSNDSPGKHYILKADLLAIIGLIYREI 162 Query: 174 ---------PLAEFTAPPSKRDRQETGIQPLLIHLSNHFHEPLTVEEAARICCVTPNYFC 224 ++E SK Q+ + + ++ H+ EP++++E A + YF Sbjct: 163 PQKKTQPDSVISEKAVLKSKETLQK--LDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFT 220 Query: 225 HLFKKNTGKTLIEYVNMLRVHEASRLLQLRRYSIQEVAFRVGFTGLTYFGRIFKQHTSMT 284 FK+NTG T + ++N R+++A +L + + EVA GF+ + F FK+ + Sbjct: 221 KFFKRNTGMTFVTFLNDYRLNKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVA 280 Query: 285 PSEY 288 P +Y Sbjct: 281 PLKY 284 >BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 291 Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 19/259 (7%) Query: 39 IPPHWHDHLEWILITKGSFRVQVGPHSRELMQGELAFVSRPQIHAAYPTEDGSELYAVVY 98 IP HWHD ++++LI KG Q+ E+ +G+ F++ +H A E GS+ + Sbjct: 38 IPLHWHDEIQFVLILKGIALFQINEEKIEVHEGDGLFINSGYLHMAEEKE-GSDCTYICL 96 Query: 99 NEALLNGMRDLTELQHIRPLLSGEIRLP-AFYDTDQPVTRQIRGCIEQIIYSYQSKSPGY 157 N + + +++P + LP F +Q + I +++I Q K+ Y Sbjct: 97 NVSPHFVLSQELYSSYVQPYMFS-TNLPYLFLAGNQQWAKNILDAVKKINQLIQQKTSLY 155 Query: 158 ELCI--------KGGLFSSLGLAYPLAEFTAPPSKRDRQETGIQPLLIHLSNHFHEPLTV 209 E+ I K + + L Y +E S R +Q IHL H+ E +T+ Sbjct: 156 EIDITMQLTLMWKNLVVNGFQLEYDQSEMI--KSHRMKQMLN----WIHL--HYVEKITL 207 Query: 210 EEAARICCVTPNYFCHLFKKNTGKTLIEYVNMLRVHEASRLLQLRRYSIQEVAFRVGFTG 269 E+ A+ ++ + C FK+ KT + YV R+ ++ LLQ ++ EV+++VGF Sbjct: 208 EDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDYRIQKSLLLLQHPESNVTEVSYQVGFNS 267 Query: 270 LTYFGRIFKQHTSMTPSEY 288 +YF F+Q +MTP Y Sbjct: 268 TSYFISKFQQAMNMTPLSY 286 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 57/91 (62%) Query: 198 HLSNHFHEPLTVEEAARICCVTPNYFCHLFKKNTGKTLIEYVNMLRVHEASRLLQLRRYS 257 ++ +HF EPLT+++ A+ ++P Y LFK+ T EYV LRV A +LL L + S Sbjct: 423 YVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLTQKS 482 Query: 258 IQEVAFRVGFTGLTYFGRIFKQHTSMTPSEY 288 ++E+ + +G+ YF R+FK+ T +PS+Y Sbjct: 483 LKEITYEIGYKDPNYFSRVFKKLTGKSPSDY 513 >BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 298 Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 63/261 (24%), Positives = 120/261 (45%), Gaps = 23/261 (8%) Query: 39 IPPHWHDHLEWILITKGSFRVQVGPHSRELMQGELAFVSRPQIHAAYPTEDGSELYAVVY 98 +P HWHD L++++I +G R QV + + +G+ F++ +H +GS + Sbjct: 40 MPLHWHDELQFVVIIQGEARFQVNEEAIIVQEGDGLFINSGCLHMV-EDGNGSNCVYICL 98 Query: 99 NEALLNGMRDLTELQHIRPLLSGE----IRLPAFYDTDQPV---TRQIRGCIEQIIYSYQ 151 N + + ++ P + + +P+ Q + T I C+E+ Sbjct: 99 NVPAQSIISRELYTAYVAPYVQATNLPYVLIPSSEMWGQNIIEATLNIHQCLEE------ 152 Query: 152 SKSPGYELCIKGGLF----SSLGLAYPLAEFTAPPSKRDRQETGIQPLLIHLSNHFHEPL 207 + P YE+ I L S + +PL + K R + +Q IHL H+ E + Sbjct: 153 -QPPYYEMDITTKLTVIWKSLITNGFPLEYDQSAMIKNQRMKAMLQ--WIHL--HYGENI 207 Query: 208 TVEEAARICCVTPNYFCHLFKKNTGKTLIEYVNMLRVHEASRLLQLRRYSIQEVAFRVGF 267 +++ A+ ++ + C FK+ T ++YV R+ ++ LLQ ++ +VA++VGF Sbjct: 208 RLDDIAKAGQLSRSECCRYFKRTLKMTPLQYVTDYRIQKSVTLLQQPESNVTDVAYQVGF 267 Query: 268 TGLTYFGRIFKQHTSMTPSEY 288 +YF F++ +MTP Y Sbjct: 268 NSTSYFIDQFRKAMNMTPLRY 288 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.139 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,808,621 Number of extensions: 883639 Number of successful extensions: 2477 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 2473 Number of HSP's successfully gapped: 72 Length of query: 300 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 194 Effective length of database: 26,153,027 Effective search space: 5073687238 Effective search space used: 5073687238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)