BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0013.p
         (114 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_sinR [K] COG1396 Predicted transcriptional regulators              136   9e-33
BS_slr [K] COG1396 Predicted transcriptional regulators                64   6e-11
RSc1159 [K] COG1396 Predicted transcriptional regulators               57   6e-09
DR2574 [K] COG1396 Predicted transcriptional regulators                54   7e-08
mll1444 [K] COG1396 Predicted transcriptional regulators               51   3e-07

>BS_sinR [K] COG1396 Predicted transcriptional regulators
          Length = 111

 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 87/110 (79%)

Query: 5   MGSRIHHLRLEKGWSLSELADKADVAKSYLSNVERNIQSNPSIQFIEKIADALQVSIHSL 64
           +G RI   R EKG+SLSELA+KA VAKSYLS++ERN+Q+NPSIQF+EK++  L VS+H+L
Sbjct: 2   IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61

Query: 65  LYGEPSDADESSLDGEWFRLVQEAMASGISKREFKEFLDYQKWRLEQKDQ 114
           L  +     +  LD EW +LV++AM SG+SK++F+EFLDYQKWR  QK++
Sbjct: 62  LDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQKWRKSQKEE 111


>BS_slr [K] COG1396 Predicted transcriptional regulators
          Length = 152

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 5   MGSRIHHLRLEKGWSLSELADKADVAKSYLSNVERNIQSNPSIQFIEKIADALQVSIHSL 64
           +G  I   R  KG+S+++LA ++ V+KSYLS +ER + +NPS+QF++K++  L+V +  L
Sbjct: 2   IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTEL 61

Query: 65  LYGEPSDADE-SSLDGEWFRLVQEAMASGISKREFKEFLD 103
              E    ++ S  + EW   + +A+ +G+ K E   F +
Sbjct: 62  FDAETMMYEKISGGEEEWRVHLVQAVQAGMEKEELFTFTN 101


>RSc1159 [K] COG1396 Predicted transcriptional regulators
          Length = 182

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 5  MGSRIHHLRLEKGWSLSELADKADVAKSYLSNVERNIQSNPSIQFIEKIADALQVSIHSL 64
          M  R+  LR ++GW+L  LA++  + KSYLS VER + S PSI    K+A AL V   + 
Sbjct: 1  MTVRLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGL-SVPSIAVAMKLAGALGVPAET- 58

Query: 65 LYGEPSDAD 73
          L+GEP+ A 
Sbjct: 59 LFGEPAAAS 67


>DR2574 [K] COG1396 Predicted transcriptional regulators
          Length = 131

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 8  RIHHLRLEKGWSLSELADKADVAKSYLSNVERNIQSNPSIQFIEKIADALQVSIHSLL-- 65
          R+  LR E+G  L ++A+ AD++  YLS++ER  ++NPS++ ++ +A A  +++H LL  
Sbjct: 8  RLRELRSERGLRLKDVAEVADISVPYLSDLERG-RTNPSLETLQTLAGAYNITVHDLLEG 66

Query: 66 ---YGEPSDA 72
             YGE +D 
Sbjct: 67 VEFYGESTDG 76


>mll1444 [K] COG1396 Predicted transcriptional regulators
          Length = 187

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 1  VPDNMGSRIHHLRLEKGWSLSELADKADVAKSYLSNVERNIQSNPSIQFIEKIADALQVS 60
          +   +G RIH  R+ + WSL+ELA+++ V+K+ LS +ER + S P+   + +IA A  ++
Sbjct: 8  ISSTIGRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTS-PTATLLVRIAAAFGMT 66

Query: 61 IHSLL 65
          + +L+
Sbjct: 67 LSTLI 71


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.313    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,853,983
Number of extensions: 251661
Number of successful extensions: 553
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 10
Length of query: 114
Length of database: 38,378,431
Length adjustment: 81
Effective length of query: 33
Effective length of database: 29,036,377
Effective search space: 958200441
Effective search space used: 958200441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)