BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0011.p
         (199 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2130 [U] COG0681 Signal peptidase I                                 158   5e-39
BS_sipW [U] COG0681 Signal peptidase I                                149   3e-36
AF1655 [U] COG0681 Signal peptidase I                                  54   2e-07

>BH2130 [U] COG0681 Signal peptidase I
          Length = 191

 Score =  158 bits (400), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 104/160 (65%), Gaps = 3/160 (1%)

Query: 5   MLIKKILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQTGSI 64
           M I KI+S +++                S ASGG+P +FG+++  VLSGSMEP   TGSI
Sbjct: 3   MKILKIISKSMTFLLFLLMISVAMLSIISHASGGKPTVFGHQLNVVLSGSMEPAFHTGSI 62

Query: 65  VALKP-GGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVDMT 123
           +A+K   G+ T F+ GDVITF+ EDN L+THRIV+         V Y TKGDNNDA D+ 
Sbjct: 63  IAVKQVEGNGTGFQAGDVITFLKEDNTLVTHRIVEVLQN--GDHVQYVTKGDNNDAADLE 120

Query: 124 PVSSGNVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPG 163
           PV + NVV EYTG TVPY+GY + FA +K G+ +LMIVPG
Sbjct: 121 PVLAANVVGEYTGFTVPYLGYILTFATTKEGTALLMIVPG 160


>BS_sipW [U] COG0681 Signal peptidase I
          Length = 190

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 105/180 (58%), Gaps = 2/180 (1%)

Query: 9   KILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQTGSIVALK 68
           K++S+ L                 +R+SGGEPA+FGY +K+VLSGSMEP   TGS++ +K
Sbjct: 2   KLISNILYVIIFTLIIVLTLVVISTRSSGGEPAVFGYTLKSVLSGSMEPEFNTGSLILVK 61

Query: 69  PGGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVDMTPVSSG 128
              D+   +KGDVITFM + N  +THRIVD + +     ++++TKGDNN A D  PVS  
Sbjct: 62  EITDVKELQKGDVITFMQDANTAVTHRIVDITKQ--GDHLLFKTKGDNNAAADSAPVSDE 119

Query: 129 NVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPGXXXXXXXXXXXXXXXXXXEKKNTAL 188
           NV A+YTG  +PY GY ++FA+   G+ VL+IVPG                  E+K  AL
Sbjct: 120 NVRAQYTGFQLPYAGYMLHFASQPIGTAVLLIVPGVMLLVYAFVTISSAIREIERKTKAL 179


>AF1655 [U] COG0681 Signal peptidase I
          Length = 290

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 13/105 (12%)

Query: 46  EIKTVLSGSMEPGIQTGSIVALKPGGDMTRFKKGDVITFMS---EDNILITHRIVDASAK 102
            I  VLS SMEP +  G ++ +K   D++    GDV+ F     + ++LITHR+V+    
Sbjct: 28  RILVVLSSSMEPLMHPGDLIVVKRSSDVSL---GDVVAFKDPSGKKSVLITHRVVE---- 80

Query: 103 NAAGEVVYRTKGDNNDAVDMTPVSSGNVVAEYTGVTVPYIGYAMN 147
              G+  ++TKGD  + VD   V   +V  ++    +PYIGY  +
Sbjct: 81  --IGDGYFKTKGDAVEDVDPFDVHEKDVYGKFL-FGIPYIGYLFH 122


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.313    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,764,475
Number of extensions: 379484
Number of successful extensions: 664
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 3
Length of query: 199
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 98
Effective length of database: 26,729,697
Effective search space: 2619510306
Effective search space used: 2619510306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)