BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0009.p (325 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1739 [C] COG0667 Predicted oxidoreductases (related to aryl-al... 139 5e-33 DR2317 [C] COG0667 Predicted oxidoreductases (related to aryl-al... 127 2e-29 lin2113 [C] COG0667 Predicted oxidoreductases (related to aryl-a... 125 1e-28 TM1006 [C] COG0667 Predicted oxidoreductases (related to aryl-al... 124 2e-28 BS_yccK [C] COG0667 Predicted oxidoreductases (related to aryl-a... 119 8e-27 >PA1739 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 15/309 (4%), Positives = 51/309 (16%), Gaps = 38/309 (12%) Query: 2 LKTLPLNKRSIPASRIALGCMGLGG-GWDHEPVTAENVKQGHEAVEAALAIGINFFDHAD 60 ++ + S+ S + LG M G + + + A L + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAV---AQGINLIDVAEMYPVPP 57 Query: 61 IYTRGKAEKVFGQIFKERPGLRDEIILQSKCGIKLMEPGDRSNVFDFSKEHILNSVDGTL 120 + + + + E ++ + ++ + + Sbjct: 58 RPETQGLTETYVGNWLAK-HGSREKLIIASKVSGP---SRNNDKGIRPDQALDRKNIREA 113 Query: 121 TRLGTEYIDILLLHRPDPLMDPEEVAEALHQLKAAGKVRHFGVSNMSAAQIKLLQAYCDE 180 + + L + + + Q Sbjct: 114 LHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRA--- 170 Query: 181 PFIVNQLHMSLAK-ISWVDAVISVNREPWKDITFPEGTIEHCRAENIQLQAWGPLAQGIF 239 + V+ K + + Sbjct: 171 -----GKIRYIGVSNETAFGVMRYLHLADKHD------LPRIVTIQNPYSLLNRSFEVGL 219 Query: 240 SG---------RPLEGQP------ENIVNTASMVKTLAEEKNTTPEAIVLSWLMTHPAAI 284 + + + T + + Sbjct: 220 AEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVD 279 Query: 285 QPVIGTVNP 293 ++P Sbjct: 280 IARRHGLDP 288 >DR2317 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 18/319 (5%), Positives = 49/319 (15%), Gaps = 40/319 (12%) Query: 7 LNKRSIPASRIALGCMGLGGGWDHEPVTAENVKQGHEAVEAALAIGINFFDHADIYTRGK 66 + S+ S + LG +E A I + Sbjct: 6 IPHSSLEVSTLGLG------TMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRP 59 Query: 67 AEKVFGQIFKERPGLRDEIILQSKCGIKLMEPGDRSNVFDFSKEHILNSVDGTLTRLGTE 126 + + + + + K ++ + K + Sbjct: 60 ETQGLTETYVGNW--LAKHGSREKL---IIASKVSGPSRNNDKGIRPDQALDRKNIREAL 114 Query: 127 YIDILLLHRPDPLMDPEEVAEALHQLKAAGKVRHFGVSNMSAAQIKLLQAYCDEPFIVNQ 186 + + L + + + + Sbjct: 115 HDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLD----TLDALAEYQRA 170 Query: 187 LHMSLAKISWVDAVISVNREPWKDITFPEGTIEHCRAENIQLQAWGPLAQGIFSGRPLEG 246 + V + + + H + +Q L F E Sbjct: 171 GK---IRYIGVSNETAFGVMRYLHLADK-----HDLPRIVTIQNPYSLLNRSFEVGLAEV 222 Query: 247 QPENI-----------------VNTASMVKTLAEEKNTTPEAIVLSWLMTHPAAIQPVIG 289 + + AA + Sbjct: 223 SQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAR 282 Query: 290 TVNPGRIAACRDAGKLELS 308 + + Sbjct: 283 RHGLDPAQMALAFVRRQPF 301 >lin2113 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 21/332 (6%), Positives = 56/332 (16%), Gaps = 44/332 (13%) Query: 2 LKTLPLNKRSIPASRIALGCMGLGGG--WDHEPVTAENVKQGHEAVEAALAIGINFFDHA 59 ++ + S+ S + LG M G + + + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLD--YAVAQGINLIDVAEMYPVPPR 58 Query: 60 DIYTRGKAEKVFGQIFKERPGLRDEIILQSKCGIKLMEPGDRSNVFDFSKEHILNSVDGT 119 V + K II G D+ D + + Sbjct: 59 PETQGLTETYVGNWLAKHGSR-EKLIIASKVSG-PSRNN-DKGIRPDQALDRKNIREALH 115 Query: 120 LTRLGTEYIDILLLHRPDPLMDPEEVAEALHQLKAAGKVRHFGVSNMSAAQIKLLQAYCD 179 + + + L P + + + + + A+ + Sbjct: 116 DSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRY 175 Query: 180 E----PFIVNQLHMSLAKISWVDAVISVNREPWKDITFPEGTIEHCRAENIQLQAWGPLA 235 + + + I + L + Sbjct: 176 IGVSNETAFGVMRYLH-----------LADKHDLPR------IVTIQNPYSLLNRSFEVG 218 Query: 236 QGIFS-----------GRPLE-GQPENIVNTAS----MVKTLAEEKNTTPEAIVLSWLMT 279 S + + + + + Sbjct: 219 LAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYV 278 Query: 280 HPAAIQPVIGTVNPGRIAACRDAGKLELSRRE 311 A + + L Sbjct: 279 DIARRHGLDPAQMALAFVRRQPFVASTLLGAT 310 >TM1006 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 16/305 (5%), Positives = 40/305 (13%), Gaps = 45/305 (14%) Query: 7 LNKRSIPASRIALGCMGLGGGWDHEPVTAENVKQGHEAVEAALAIGINFFDHADIYTRGK 66 + + + G + + + Sbjct: 8 HSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLI----DVAEMYPVPPRPETQG 63 Query: 67 AEKVFGQIFKERPGLRDEIILQSKCGIKLMEPGDRS-NVFDFSKEHILNSVDGTLTRLGT 125 + + + + + N + L Sbjct: 64 LTETYVGNWLA---KHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 126 EYIDILLLHRPDPLMDPEEVAEALHQLKAAGKVRHFGVSNMSAAQIKLLQAYCDEPFIVN 185 D L L++ P L + + A +I Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKI--RYIGV 178 Query: 186 QLHMSLAKISWVDAVISVNREPWKDITFPEGTIEHCRAENIQLQAWGPLAQGIFSG---- 241 + +H + +Q L F Sbjct: 179 SNETAFG---V--------MRYLHLA------DKHDLPRIVTIQNPYSLLNRSFEVGLAE 221 Query: 242 -----------RPLEGQPENIVNTASMV---KTLAEEKNTTPEAIVLSWLMTHPAAIQPV 287 G + + A + Sbjct: 222 VSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIA 281 Query: 288 IGTVN 292 Sbjct: 282 RRHGL 286 >BS_yccK [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 13/325 (4%), Positives = 44/325 (13%), Gaps = 42/325 (12%) Query: 3 KTLPLNKRSIPASRIALGCMGLGGGWDHEPVTAENVKQGHEAVEAALAIGINFFDHADIY 62 + ++ + A A L + Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQ---NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRP 59 Query: 63 TRGKAEKVFGQIFKERPGLRDEIILQSKCGIKLMEPGDRSNVFDFSKEHILNSVDGTLTR 122 + + + + E ++ + ++ + + Sbjct: 60 ETQGLTETYVGNWLAK-HGSREKLIIASKVSGPS---RNNDKGIRPDQALDRKNIREALH 115 Query: 123 LGTEYIDILLLHRPDPLMDPEEVAEALHQLKAAGKVRHFGVSNMSAAQIKLLQAYCDEPF 182 + + L + + + Q Sbjct: 116 DSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQR--AGKI 173 Query: 183 IVNQLHMSLAKISWVDAVISVNREPWKDITFPEGTIEHCRAENIQLQAWGPLAQGIFSGR 242 + + + P + S Sbjct: 174 RYIGVSNET-----------AFGVMRYLH------LADKHDLPRIVTIQNPYSLLNRSFE 216 Query: 243 PLEG-------------QPENIVNTASMV---KTLAEEKNTTPEAIVLSWLMTHPAAIQP 286 A +NT A+ Sbjct: 217 VGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAA 276 Query: 287 VIGTVNPGRIAACRDAGKLELSRRE 311 + + + A + Sbjct: 277 YVDIARRHGLDPAQMALAFVRRQPF 301 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,537,149 Number of extensions: 953234 Number of successful extensions: 20993 Number of sequences better than 1.0e-05: 6316 Number of HSP's gapped: 20778 Number of HSP's successfully gapped: 6316 Length of query: 325 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 218 Effective length of database: 26,037,693 Effective search space: 5676217074 Effective search space used: 5676217074 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)