BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0001.p
         (103 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2205 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex...    83   9e-17
BS_odhB [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase comple...    82   2e-16
CC1727_1 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase compl...    71   3e-13
BH2761 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex...    71   5e-13
SA1244 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex...    70   5e-13

>BH2205 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
          dihydrolipoamide acyltransferase (E2) component, and
          related enzymes
          Length = 553

 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 4/66 (6%), Positives = 11/66 (16%)

Query: 3  EIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLRQA 62
                    +  G      +  G         ++      N     + +   +  L   
Sbjct: 3  NRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQGELTSTWDLMLQ 62

Query: 63 GENVAV 68
                
Sbjct: 63 TRINLS 68


>BS_odhB [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
          dihydrolipoamide acyltransferase (E2) component, and
          related enzymes
          Length = 301

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 6/68 (8%), Positives = 14/68 (20%)

Query: 1  VSEIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLR 60
          +S  K      +I               +GQ   +   +       I           + 
Sbjct: 1  MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY 60

Query: 61 QAGENVAV 68
               + +
Sbjct: 61 VDTPGLHM 68


>CC1727_1 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
          dihydrolipoamide acyltransferase (E2) component, and
          related enzymes
          Length = 553

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 5/69 (7%), Positives = 15/69 (21%), Gaps = 1/69 (1%)

Query: 1  VSEIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLR 60
          +           +  G      +  G         ++      N     + +   +  L 
Sbjct: 1  MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQGELTSTWDLM 60

Query: 61 QAG-ENVAV 68
               N++ 
Sbjct: 61 LQTRINLSR 69


>BH2761 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
          dihydrolipoamide acyltransferase (E2) component, and
          related enzymes
          Length = 553

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 9/67 (13%), Positives = 17/67 (25%)

Query: 2  SEIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLRQ 61
          + I+V  L   +        L+             +       L     E      L+ Q
Sbjct: 3  NRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQGELTSTWDLMLQ 62

Query: 62 AGENVAV 68
             N++ 
Sbjct: 63 TRINLSR 69


>SA1244 [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex,
          dihydrolipoamide acyltransferase (E2) component, and
          related enzymes
          Length = 553

 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 4/68 (5%), Positives = 12/68 (17%)

Query: 1  VSEIKVPDLGESISEGTIYKWLVKEGDTVGQGDVLAELETDKVNLEISAEEDGVISSLLR 60
          +           +  G      +  G         ++      N     + +   +  L 
Sbjct: 1  MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQGELTSTWDLM 60

Query: 61 QAGENVAV 68
                  
Sbjct: 61 LQTRINLS 68


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.307    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,083,527
Number of extensions: 184457
Number of successful extensions: 531
Number of sequences better than 1.0e-05: 84
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 92
Length of query: 103
Length of database: 38,378,431
Length adjustment: 71
Effective length of query: 32
Effective length of database: 30,189,717
Effective search space: 966070944
Effective search space used: 966070944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 109 (46.6 bits)