BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0206.0002.p
         (234 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin1190 [L] COG0692 Uracil DNA glycosylase                            264   8e-71
lin0408 [L] COG0692 Uracil DNA glycosylase                            253   2e-67

>lin1190 [L] COG0692 Uracil DNA glycosylase
          Length = 224

 Score =  264 bits (675), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 116/219 (52%), Positives = 165/219 (75%)

Query: 16  NDWDDILQEETQKPYFQELRYALAREYKQYTVYPPKEELFSALKLTPYNSTRVVILGQDP 75
           NDWD++L++E  +PY+ +LR  L  EY+   ++P   ++F+ALK T Y   +VVILGQDP
Sbjct: 6   NDWDELLKDEFNQPYYLKLRQFLKNEYQTKRIFPDMYDIFNALKHTAYKDVKVVILGQDP 65

Query: 76  YHGAGQAHGLSFSVKPGVRVPPSLRNIYTELHDDMGVSIPNHGSLLHWAEEGVLLLNAVL 135
           YHG GQAHGLSFSV+ GV++PPSL+NIY ELH+D+   IPN+G L+ WA++GVLLLN VL
Sbjct: 66  YHGPGQAHGLSFSVQKGVQIPPSLQNIYLELHNDLNCEIPNNGYLIPWADQGVLLLNTVL 125

Query: 136 TVREGQPNSHKGLGWETFTDAVMEKLNERKAPLVFILWGSHAQQKGAYIDRSRHLVIQSP 195
           TVR GQ NSH+G GWE  T+ ++E +N+++ P+VF+LWG++A++K   +   +H+   S 
Sbjct: 126 TVRAGQANSHRGQGWELLTNRIIEMINQKEEPVVFLLWGNNAKEKLQLLTNPKHIAFTSV 185

Query: 196 HPSPFSAHRGFLGSRPFSRANQYLESHGLQGIDWSIPNI 234
           HPSP SA RGF+G + FS+ N +LE +G++ IDW IP+I
Sbjct: 186 HPSPLSASRGFMGCKHFSKTNHFLEQNGIKPIDWQIPSI 224


>lin0408 [L] COG0692 Uracil DNA glycosylase
          Length = 221

 Score =  253 bits (646), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 153/214 (71%)

Query: 18  WDDILQEETQKPYFQELRYALAREYKQYTVYPPKEELFSALKLTPYNSTRVVILGQDPYH 77
           WD+ L++E ++PYF EL  A++   ++  VYP +E++FS  +L PY+  +VVILGQDPYH
Sbjct: 5   WDEFLEQEAKQPYFIELMKAVSEAREEGNVYPSEEDMFSCFRLCPYDKVKVVILGQDPYH 64

Query: 78  GAGQAHGLSFSVKPGVRVPPSLRNIYTELHDDMGVSIPNHGSLLHWAEEGVLLLNAVLTV 137
           G GQAHGLSFSV+  VR+PPSLRNIY EL  D+ +   NHG L  WAE+GVLL+N   +V
Sbjct: 65  GPGQAHGLSFSVQKDVRIPPSLRNIYKELKSDLDIDPANHGYLAKWAEQGVLLMNTSWSV 124

Query: 138 REGQPNSHKGLGWETFTDAVMEKLNERKAPLVFILWGSHAQQKGAYIDRSRHLVIQSPHP 197
            EG+  SHK LGW TFTD V+E+LN    PLVFILWG+HA +  + I   +HL+I+  HP
Sbjct: 125 EEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPKHLLIKGVHP 184

Query: 198 SPFSAHRGFLGSRPFSRANQYLESHGLQGIDWSI 231
           SP +A RGF GS+PFS+ N++L+ +    IDW +
Sbjct: 185 SPLAASRGFFGSKPFSKTNEFLKENNRTPIDWDL 218


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,069,608
Number of extensions: 847076
Number of successful extensions: 2783
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2783
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 131
Effective length of database: 26,499,029
Effective search space: 3471372799
Effective search space used: 3471372799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)