BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0205.0007.p
         (583 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0153_2 [R] COG3979 Uncharacterized protein contain chitin-bin...    56   1e-07

>lin0153_2 [R] COG3979 Uncharacterized protein contain chitin-binding domain
           type 3
          Length = 141

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 108 EQVKVTWNAATDNDSVVTYNVYRDGGTEPVMTIPGRITFYNDYTVTPETVYSYRIQAVDD 167
           + V ++W A+TDN +V  Y VYR+G TE V ++ G  T + D  +T +T Y+Y ++A D 
Sbjct: 17  KSVTLSWTASTDNKAVAGYKVYRNG-TE-VGSVSG--TTFTDSGLTAKTAYTYTVKAYDA 72

Query: 168 SGNVSPLSTAVSATTLPMPITPHVPG 193
           +GN S  S+A++ TTL     P  P 
Sbjct: 73  AGNFSAASSALTVTTLDAATPPATPA 98


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 44,749,349
Number of extensions: 1989062
Number of successful extensions: 3568
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3566
Number of HSP's successfully gapped: 2
Length of query: 583
Length of database: 38,378,431
Length adjustment: 112
Effective length of query: 471
Effective length of database: 25,461,023
Effective search space: 11992141833
Effective search space used: 11992141833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 119 (50.4 bits)