BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0205.0005.p (513 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 290 5e-78 lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic... 253 6e-67 SP0092 [G] COG1653 ABC-type sugar transport system, periplasmic ... 223 8e-58 SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic... 170 4e-42 SPy1591 [G] COG1653 ABC-type sugar transport system, periplasmic... 60 1e-08 >BH0796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 500 Score = 290 bits (741), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 178/488 (36%), Positives = 271/488 (55%), Gaps = 26/488 (5%) Query: 33 VAPTGTQADSTAAPAASDK-----AVATEKTNELEQVELSLYLPGGPDKDVASVEQAINE 87 VA + S + P D+ A TE T+ L+ V L+ Y+ G P D+ V + +N Sbjct: 19 VACSSANESSQSEPEGHDESGEQSANETEATD-LDHVTLTWYMIGTPQPDLELVMEEVNA 77 Query: 88 YLKDKINATIKINQLSWDKPADKVNLMIQSGEVFDMVYT--W--NFMTNAAKGAYLPLEE 143 Y ++KINAT+ + L W + +++ ++ SGE +D+ +T W N+ NA +GA+L L + Sbjct: 78 YTEEKINATVDLRMLDWGEYDERMQVITTSGEAYDIAFTSSWANNYALNARRGAFLELND 137 Query: 144 LLDTYAKETKAQINPAYLQAATVNGHLYAVPTEKELGQSVGFAFDKAIVDKYGFDVNSIK 203 LLD + +E K I+PA+L+ A V+G LYAVPT KE+GQ +F+ +V+K+ D++S+ Sbjct: 138 LLDEHGQEMKELIDPAFLEGAQVDGKLYAVPTNKEVGQQAVLSFNNELVEKHNLDLSSVH 197 Query: 204 KLEDIEPMLKTIKEKEPAITPLFMNHTDSLNWFTVY-PDSEDLDGSNEIPTLLDYKTMKV 262 L D+EP+L IKE+E +TP+ F Y P L L+ T +V Sbjct: 198 SLADLEPLLAVIKEEESDVTPIAT--------FDAYLPFDSILQEEMPFAFRLEGNTNEV 249 Query: 263 FNEYDTPEILARLKLIREWYKAGYINKNGATDKTELKDAVKSGKAWFTYGNM-NPTSTND 321 N+Y+ + LK + ++YK GYI + AT + WF + P + Sbjct: 250 INKYEEDITMETLKTMHDYYKKGYIRPDAATSTDSWPLETPN---WFVRKELYQPYAELI 306 Query: 322 WTRLAEKPMVIKTLLPVQVSTKSLQGSMLAISRTSKNPERAMMFINLIHTDPVLYNLLTF 381 WTR A + + L + S+ GSM AIS TSKNPERAMMF+NL+++DP L NLL Sbjct: 307 WTRTAGYEIATRPLHEPYIFNNSVTGSMQAISATSKNPERAMMFLNLLNSDPYLRNLLDK 366 Query: 382 GIEGKHYKKVGDNTVEFIPD--SGYNSVSSWMIGNVLLNYLNKDEDPKRVQLYTDWNKNS 439 GIEG HY+++ D T+ +P YN + S+ IGN L+ L +D+ + + + +N+++ Sbjct: 367 GIEGVHYEELEDGTINDLPARVERYN-MPSFAIGNQLILKLYEDDPQDKWEAFEAFNESA 425 Query: 440 KVSPVIGFVFDSTKVQSQIGALINITKQYKNTLYSGEKDPEPILKEMNSKLKAAGLDAVI 499 SP +GF FDS V+++I A+ N+T ++ L G DPE L N KL AGL VI Sbjct: 426 IPSPALGFYFDSNPVRTEIAAISNVTSEFSPALLKGAVDPEEYLPLFNDKLNEAGLQKVI 485 Query: 500 SEIQSQMD 507 E+Q Q D Sbjct: 486 DEMQRQFD 493 >lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 485 Score = 253 bits (645), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 152/476 (31%), Positives = 260/476 (54%), Gaps = 34/476 (7%) Query: 56 EKTNELEQVELSLYLPGGPDKDVASVEQAINEYLKDKINATIKINQLSWDKPADKVNLMI 115 EK + E L Y+ G P KD V + +N+Y ++KI +++ Q+ W ++ +I Sbjct: 25 EKADANEVPTLKWYMIGTPQKDTEEVMKEVNKYTEEKIGVKVEMTQIDWGDYGKRMQTVI 84 Query: 116 QSGEVFDMVYT--WNFMTNAAKGAYLPLEELLDTYAKETKAQINPAYLQAATVNGHLYAV 173 SGE FD+ Y+ F++ + KGA+LPL + LD K+ KA++N + AT++G++Y V Sbjct: 85 NSGENFDIAYSAAGEFVSYSQKGAFLPLNKYLDKEGKKMKAELNEVLWEGATIDGNIYGV 144 Query: 174 PTEKELGQSVGFAFDKAIVDKYGFDVNSIKKLEDIEPMLKTIKEKEPAITPLFMNHTDSL 233 P+ KE+G+ + F+K +VDKY D++ +K D+EPMLKTIKE EP+ITP+ N Sbjct: 145 PSNKEVGEQQVYVFNKNLVDKYKMDISKVKNFSDLEPMLKTIKENEPSITPIGGNK---- 200 Query: 234 NWFTVYPDSEDLDGSNEIPTLLDY--KTMKVFNEYDTPEILARLKLIREWYKAGYINKNG 291 ++ + +D + +P ++ T K+ N Y+ P+ L LK + +Y+ GY+ K+ Sbjct: 201 DFKPAFSYDYLIDNAVPLPFAVNQYEDTGKIVNFYEQPDTLETLKSLHSFYQKGYVTKDI 260 Query: 292 ATDKTELKDAVKSGKAWFTY-GNMNPTSTNDWTR------------LAEKPMVIKTLLPV 338 AT + WF P + N W + +AE P+ Sbjct: 261 ATSTDPWS---YDKENWFVRIEKYQPYAENIWDKNTGGKYKVVTQPIAETPI-------- 309 Query: 339 QVSTKSLQGSMLAISRTSKNPERAMMFINLIHTDPVLYNLLTFGIEGKHYKKVGDNTVEF 398 + S+ G++ A+S TS++PE A+ F++L++TD L NL+ GIEG HYK++ D ++ Sbjct: 310 -IKNNSVTGAIQAVSVTSQHPEEAVKFLDLLNTDEYLRNLVDKGIEGTHYKELDDGKIQD 368 Query: 399 IPDSGYN-SVSSWMIGNVLLNYLNKDEDPKRVQLYTDWNKNSKVSPVIGFVFDSTKVQSQ 457 +P S+ ++ +GN + L +DE + + +NK S SP +GF FDS+KV+++ Sbjct: 369 LPARVERYSMPTYALGNHFILKLYEDEPADKWDQFKTFNKKSVASPGLGFYFDSSKVRTE 428 Query: 458 IGALINITKQYKNTLYSGEKDPEPILKEMNSKLKAAGLDAVISEIQSQMDAFLAAK 513 I ++ N+ ++ L +G DP ++ +KL AG+ V+ E+Q Q D + A + Sbjct: 429 IASITNVCNEFAPALLTGTVDPVEYTEKFKAKLNDAGMKKVMKEMQKQYDEYRATQ 484 >SP0092 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 491 Score = 223 bits (567), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 140/443 (31%), Positives = 236/443 (53%), Gaps = 30/443 (6%) Query: 86 NEYLKDKINATIKINQLSWDKPADKVNLMIQSGEVFDMVYTWNFMTNAAKGAYLPLEELL 145 N+ +++K+ A + I L W K++++ SGE +D+ + N++ NA KGAY L EL Sbjct: 63 NKIIEEKVGAKLDIQYLGWGDYGKKMSVITSSGENYDIAFADNYIVNAQKGAYADLTELY 122 Query: 146 DTYAKETKAQINPAYLQAATVNGHLYAVPTEKELGQSVGFAFDKAIVDKYGFDVNSIKKL 205 K+ ++PAY++ TVNG +YAVP + S FAF+ ++ KYG D++ + Sbjct: 123 KKEGKDLYKALDPAYIKGNTVNGKIYAVPVAANVASSQNFAFNGTLLAKYGIDISGVTSY 182 Query: 206 EDIEPMLKTIKEKEPAITPLFMNHTDSLNWFTVYPDSEDLDGSNEIPTLLDYK--TMKVF 263 E +EP+LK IKEK P + P ++ + D+ D +N +P ++D + T KV Sbjct: 183 ETLEPVLKQIKEKAPDVVPF------AIGKVFIPSDNFDYPVANGLPFVIDLEGDTTKVV 236 Query: 264 NEYDTPEILARLKLIREWYKAGYINKNGATDKTELKDAVKSGKAWFT---------YGNM 314 N Y+ P LK + ++Y+AGYI K+ AT T WF YGN Sbjct: 237 NRYEVPRFKEHLKTLHKFYEAGYIPKDVATSDTSFD---LQQDTWFVREETVGPADYGN- 292 Query: 315 NPTSTNDWTRLAEKPMVIKTLLPVQVSTKSLQGSMLAISRTSKNPERAMMFINLIHTDPV 374 + +R+A K + IK + ++ Q + IS SKN E++M +NL++T+P Sbjct: 293 -----SLLSRVANKDIQIKPITNFIKKNQTTQVANFVISNNSKNKEKSMEILNLLNTNPE 347 Query: 375 LYNLLTFGIEGKHYKKV--GDNTVEFIPD-SGYNSVSSWMIGNVLLNYLNKDEDPKRVQL 431 L N L +G EGK+++K+ +N V + G + W GN + Y+N++ ++++ Sbjct: 348 LLNGLVYGPEGKNWEKIEGKENRVRVLDGYKGNTHMGGWNTGNNWILYINENVTDQQIEN 407 Query: 432 YTDWNKNSKVSPVIGFVFDSTKVQSQIGALINITKQYKNTLYSGEKDPEPILKEMNSKLK 491 +K SP +GF+F++ V+S+I A+ N +Q+ + +G DP+ + E+ KLK Sbjct: 408 SKKELAEAKESPALGFIFNTDNVKSEISAIANTMQQFDTAINTGTVDPDKAIPELMEKLK 467 Query: 492 AAG-LDAVISEIQSQMDAFLAAK 513 + G + V++E+Q Q D FL K Sbjct: 468 SEGAYEKVLNEMQKQYDEFLKNK 490 >SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 380 Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 113/386 (29%), Positives = 192/386 (49%), Gaps = 21/386 (5%) Query: 33 VAPTGTQADSTAAPAASDKAVATEKTNELEQVELSLYLPGGPDKDVASVEQAINEYLKDK 92 V TGT ++ A K+ + + V+L +Y G + + N+ +K+K Sbjct: 8 VCVTGTVLATSNLAACESKSASKD-----SDVKLLMYQVGDKPDNFDELMTIANKRIKEK 62 Query: 93 INATIKINQLSWDKPADKVNLMIQSGEVFDMVYTWNFMTNAAKGAYLPLEELLDTYAKET 152 AT+ + + W DK++ +I SGE +D+ + N++ NA KGA+ L L+ YAK+T Sbjct: 63 TGATVDLQYIGWGDWDDKMSTIIASGENYDIAFANNYVVNAQKGAFADLTTLMPKYAKKT 122 Query: 153 KAQINPAYLQAATVNGHLYAVPTEKELGQSVGFAFDKAIVDKYGFDVNSIKKLEDIEPML 212 ++PAY++ T++G LYA P + + +F+K +VDKYG D+++IK D E +L Sbjct: 123 YKNLDPAYIKGNTIDGKLYAFPVDANVYAQQMLSFNKELVDKYGLDISNIKSYADAENVL 182 Query: 213 KTIKEKEPAITPLFMNHTDSLNWFTVYPDSEDLDGSNEIPTLLDYKTMKVFNEYDTPEIL 272 K EKEP + S++ YP L + +D + N+Y+ Sbjct: 183 KQFHEKEPNTAAFAIGQVFSMSGDYDYP----LTKTQPFAVKIDEGKPTIINQYEDESFK 238 Query: 273 ARLKLIREWYKAGYINKNGATDKTELKDAVKSGKAWF----TYGNMNPTSTNDWTRLAEK 328 L+L+ +WYK G I + AT+ + G WF T G M+ T T A K Sbjct: 239 NNLRLMHKWYKEGLIPTDAATN---TEGYPLEGNTWFMREETQGPMDYGDT-ILTNAAGK 294 Query: 329 PMVIKTLLPVQVSTKSLQGSMLAISRTSKNPERAMMFINLIHTDPVLYNLLTFGIEGKHY 388 +V + L +T Q + +S SKN E+A+ ++L+++DP L N L +G+EGK + Sbjct: 295 DIVSRPLTKPLKTTSQAQMANFVVSSVSKNKEKAVEVLSLLNSDPELLNGLVYGVEGKAW 354 Query: 389 KKVGDNTVEFI----PDSGYNSVSSW 410 +K+GD ++ + P + + + W Sbjct: 355 EKIGDKKIKLLDGYQPKNAHGCLEYW 380 >SPy1591 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 110 Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 49/75 (65%) Query: 437 KNSKVSPVIGFVFDSTKVQSQIGALINITKQYKNTLYSGEKDPEPILKEMNSKLKAAGLD 496 K++K SP++GF D+ +++++ + N+ +YK ++ +G DP+ L ++ + LK AG D Sbjct: 33 KDAKESPILGFTVDTKVIKTELSNISNVMNRYKASINTGTVDPDEALPKLLADLKGAGWD 92 Query: 497 AVISEIQSQMDAFLA 511 V E+Q Q+D F+A Sbjct: 93 KVQKEVQKQLDDFVA 107 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.130 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,261,409 Number of extensions: 1519696 Number of successful extensions: 2205 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 2197 Number of HSP's successfully gapped: 6 Length of query: 513 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 402 Effective length of database: 25,576,357 Effective search space: 10281695514 Effective search space used: 10281695514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)