BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0205.0004.p (300 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 274 1e-73 SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 252 6e-67 lin2116 [G] COG0395 ABC-type sugar transport system, permease co... 240 2e-63 SPy1593 [G] COG0395 ABC-type sugar transport system, permease co... 232 4e-61 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 178 1e-44 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 274 bits (701), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 130/269 (48%), Positives = 189/269 (70%) Query: 31 PIVLVFMISITDYDSIVLNGYQFIPEKLSLEAYAYIFKDYAVIVKAYGVSIFVTVAGTLL 90 P + V +IS+T S+ +NGY+ IP + S +AY Y+++ + + +AYGV+IF+TV GTL+ Sbjct: 53 PFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSEVFRAYGVTIFITVVGTLM 112 Query: 91 SVFISSLYAYPISRADFKYKGXXXXXXXXXXXXGGGLVPWYMVYTQVLDLKNSIWALIVP 150 SV I +LYAY ISR F Y+ GG+VP+Y+V TQ L LKNS+WALI+P Sbjct: 113 SVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVMTQFLGLKNSVWALILP 172 Query: 151 MLLSPFNVLIMKTYFQMSVPPALIEASKIDGAGELRTFFRIVFPLSLPVFATIGLFNTLH 210 M ++ F ++IM+T+FQ SVP A++E+++IDGAGE R FF+IV PLS+P ATI LF+TL Sbjct: 173 MAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVLPLSIPGIATIALFSTLA 232 Query: 211 YWNDWFNSMIFITDTDLYSLQYLMYKMISQADYLSRNGALIQGSATELAKLPGETIRMAM 270 YWNDWFN+++FI D L LQ L+ ++ + D++ +N L ++ L +P ++ RMAM Sbjct: 233 YWNDWFNALLFIDDPKLVPLQSLLMRIENNLDFIRQNAMLSSQNSALLDSIPQDSARMAM 292 Query: 271 ALIGIGPIVLAYPFFQRYFIKGLTLGSIK 299 +I PI L+YPFFQ+YF+KGLT+G +K Sbjct: 293 VVIATLPIALSYPFFQKYFVKGLTIGGVK 321 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 252 bits (643), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 125/271 (46%), Positives = 181/271 (66%), Gaps = 7/271 (2%) Query: 31 PIVLVFMISITDYDSIVLNGYQFIPEKLSLEAYAYI--FKDYAVIVKAYGVSIFVTVAGT 88 P V V +IS+TD S++ GY F P + L+ + ++ FKD I++A +S+FVTV GT Sbjct: 41 PFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFKDK--ILQALFISVFVTVVGT 98 Query: 89 LLSVFISSLYAYPISRADFKYKGXXXXXXXXXXXXGGGLVPWYMVYTQVLDLKNSIWALI 148 L +VFI++ YAY ISR FKY+ GLVP Y++ T+VL L +++WALI Sbjct: 99 LTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALI 158 Query: 149 VPMLLSPFNVLIMKTYFQMSVPPALIEASKIDGAGELRTFFRIVFPLSLPVFATIGLFNT 208 VPMLLSPFN+++M+++F+ ++P A++E+++IDGA E R FF+I PLSLP ATI L Sbjct: 159 VPMLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIATITLLTA 218 Query: 209 LHYWNDWFNSMIFITDTDLYSLQYLMYKMISQADYLSRNGALIQGSATELAKLPGETIRM 268 L +WNDWFN++++I +LY LQYL+ ++ DY+++ LI LP ET RM Sbjct: 219 LGFWNDWFNALLYIKSDNLYPLQYLLMQIQQNMDYIAKAVGLIGQLGVA---LPKETGRM 275 Query: 269 AMALIGIGPIVLAYPFFQRYFIKGLTLGSIK 299 AM ++ PI + YPFFQRYF+KGLT+G +K Sbjct: 276 AMVVVATLPIAILYPFFQRYFVKGLTIGGVK 306 >lin2116 [G] COG0395 ABC-type sugar transport system, permease component Length = 323 Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 116/269 (43%), Positives = 180/269 (66%), Gaps = 1/269 (0%) Query: 31 PIVLVFMISITDYDSIVLNGYQFIPEKLSLEAYAYIFKDYAVIVKAYGVSIFVTVAGTLL 90 P + + +IS + S+ NG+Q IP++ S+EAY Y++K ++++YG++I VTV GT+ Sbjct: 55 PFLYIIVISFSSETSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYGITIVVTVIGTVC 114 Query: 91 SVFISSLYAYPISRADFKYKGXXXXXXXXXXXXGGGLVPWYMVYTQVLDLKNSIWALIVP 150 SV + +LY+Y ISR FKY+ GG+VP Y+V TQ L L+NSIWA+I+P Sbjct: 115 SVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQFLHLRNSIWAMILP 174 Query: 151 MLLSPFNVLIMKTYFQMSVPPALIEASKIDGAGELRTFFRIVFPLSLPVFATIGLFNTLH 210 + ++ F ++IM+T+F S+P ++EA++I+GAGELR F ++V PLSLP ATI LF+TL Sbjct: 175 LAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPGLATIALFSTLG 234 Query: 211 YWNDWFNSMIFITDTDLYSLQYLMYKMISQADYLSRNGALIQGSATELAKLPGETIRMAM 270 YWNDWF + ++I + +L LQ L+ K+ + +++ +N I +A +P + +MAM Sbjct: 235 YWNDWFQASLYIDNPNLVPLQSLLMKIENNLEFMRQNSE-IAYTAGAFKSIPQDGAKMAM 293 Query: 271 ALIGIGPIVLAYPFFQRYFIKGLTLGSIK 299 +I PI + YPFFQ+YFI GLT+G +K Sbjct: 294 VVISTLPIAITYPFFQKYFISGLTIGGVK 322 >SPy1593 [G] COG0395 ABC-type sugar transport system, permease component Length = 308 Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 110/261 (42%), Positives = 172/261 (65%), Gaps = 2/261 (0%) Query: 41 TDYDSIVLNGYQFIPEKLSLEAYAYIFKDY--AVIVKAYGVSIFVTVAGTLLSVFISSLY 98 TD ++ +GY F P+ S +AY YIF+ I++++G+S+F+TV GT ++ ++S Y Sbjct: 47 TDESYLINHGYSFFPDVWSTKAYQYIFQGAMSHRIMRSFGISVFITVVGTFINTTMTSTY 106 Query: 99 AYPISRADFKYKGXXXXXXXXXXXXGGGLVPWYMVYTQVLDLKNSIWALIVPMLLSPFNV 158 AY ISR F Y+ G+V Y+V + +L LK+++WALI+PM L PF + Sbjct: 107 AYAISRPYFPYRRFFTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMALGPFGI 166 Query: 159 LIMKTYFQMSVPPALIEASKIDGAGELRTFFRIVFPLSLPVFATIGLFNTLHYWNDWFNS 218 L+M+T+F+ +VP ++IE++++DGA E F +IV PL++P ATI LF+ L YWNDWFN+ Sbjct: 167 LVMRTFFKKTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNA 226 Query: 219 MIFITDTDLYSLQYLMYKMISQADYLSRNGALIQGSATELAKLPGETIRMAMALIGIGPI 278 ++++ +LY +QYL+ K+ S L++N + A LA LP E++RMA+ +I PI Sbjct: 227 LLYVQSENLYPMQYLLMKIQSNLQALAQNAGMSAQMADSLASLPKESVRMAIVVIATLPI 286 Query: 279 VLAYPFFQRYFIKGLTLGSIK 299 L YPFFQ+YF+ GLT+G +K Sbjct: 287 ALTYPFFQKYFVGGLTIGGVK 307 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 102/273 (37%), Positives = 164/273 (60%), Gaps = 13/273 (4%) Query: 31 PIVLVFMISITDYDSIVLNGYQFIPEKLSLEAYAYIFKDYAVIVKAYGVSIFVTVAGTLL 90 P + V S + +V + IP SL+AY YIF +I K+ VS+FVTV GT + Sbjct: 24 PFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFST-DIIYKSLLVSVFVTVIGTAV 82 Query: 91 SVFISSLYAYPISRADFKYKGXXXXXXXXXXXXGGGLVPWYMVYTQVLDLKNSIWALIVP 150 S+F+SSL AY +SR D + GG++P ++V + L L +S WALI+P Sbjct: 83 SMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLV-VKSLGLLDSYWALILP 141 Query: 151 MLLSPFNVLIMKTYFQMSVPPALIEASKIDGAGELRTFFRIVFPLSLPVFATIGLFNTLH 210 ++ FN++I+K +FQ ++P +L E++KIDG +L FF+IV PLSLP ATI LF + Sbjct: 142 TAINAFNLIILKNFFQ-NIPSSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAVT 200 Query: 211 YWNDWFNSMIFITDTDLYSLQYLMYKMISQADYLSRNGALIQGSATELAK---LPGETIR 267 YWN + +++++ D+ + +Q L+ +++ + +G +QG +E+ P +TI+ Sbjct: 201 YWNTYMTAILYLNDSAKWPIQVLLRQIV-----IVSSG--MQGDMSEMGSGSPPPEQTIK 253 Query: 268 MAMALIGIGPIVLAYPFFQRYFIKGLTLGSIKG 300 MA+ ++ P++L YPF Q++F KG LGS+KG Sbjct: 254 MAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,599,032 Number of extensions: 650339 Number of successful extensions: 2694 Number of sequences better than 1.0e-05: 133 Number of HSP's gapped: 2522 Number of HSP's successfully gapped: 133 Length of query: 300 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 194 Effective length of database: 26,153,027 Effective search space: 5073687238 Effective search space used: 5073687238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)