BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0205.0003.p (328 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0794 [G] COG4209 ABC-type polysaccharide transport system, per... 294 1e-79 SP0090 [G] COG4209 ABC-type polysaccharide transport system, per... 268 1e-71 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 138 1e-32 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 134 2e-31 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 130 2e-30 >BH0794 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 312 Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/282 (53%), Positives = 198/282 (70%), Gaps = 6/282 (2%) Query: 52 NYLPMFGIIIAFKNINY-VDGILGS----PWVGLDNFKFLFATSDAWIITRNTVLYNFVF 106 Y+PMFG IIAFK+ + DG S WVGL+NF+FLF+T+DA+IITRNTVLYN VF Sbjct: 32 KYIPMFGQIIAFKDFRFHPDGFFASLYHSEWVGLENFQFLFSTNDAFIITRNTVLYNVVF 91 Query: 107 IILNLVIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKG 166 I+L LV+AV++AI ++EL N+ AK YQ+ M FP+FLS VVVSY VF FL+++ G N Sbjct: 92 IVLGLVLAVAVAIIISELTNQKLAKIYQTGMLFPHFLSWVVVSYFVFTFLSIDRGLFNT- 150 Query: 167 ILAMFGLNELNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGAS 226 IL+ ++ + WY+EP YWP+ + I+ WKGVG+ ++YLAAI+ ID YYEAA+IDGAS Sbjct: 151 ILSAINIDPVAWYNEPGYWPYFIITISQWKGVGFSSIVYLAAIVAIDRTYYEAAIIDGAS 210 Query: 227 KWKQILHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTTLNSGALYPTTLVIDTYVYNA 286 KW+QI H F +DFGLFYQ +SG LY T VIDTYVY Sbjct: 211 KWQQIRHVTIPMIMPLIIILTILNIGSIFSADFGLFYQVPRDSGPLYSVTNVIDTYVYRG 270 Query: 287 LINMGNLGMSAAAGLYQSIVGFFLVLGSNWIVRKVDKDQAVF 328 L+ MG++GMS AAGLYQ+ VGF L+L +N+IVRK+D++ A+F Sbjct: 271 LMTMGDIGMSTAAGLYQATVGFVLILITNYIVRKIDEENALF 312 >SP0090 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 136/281 (48%), Positives = 189/281 (67%), Gaps = 6/281 (2%) Query: 53 YLPMFGIIIAFKNIN-----YVDGILGSPWVGLDNFKFLFATSDAWIITRNTVLYNFVFI 107 Y+P+FG ++AFK+ + ++D I+ S WVGLDNF+FLF++ DA+IITRNTVLYN FI Sbjct: 40 YIPVFGNVVAFKDYHMTSNGFIDSIINSKWVGLDNFRFLFSSRDAFIITRNTVLYNLGFI 99 Query: 108 ILNLVIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKGI 167 L LV++V IAI L+EL++K K +Q+ M FPYFLS V++S+ AFLN++ G N + Sbjct: 100 FLGLVVSVGIAIILSELRSKRMVKIFQTSMLFPYFLSWVIISFFTDAFLNIDKGVFNH-L 158 Query: 168 LAMFGLNELNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGASK 227 L GL E+N+Y++ WP++L + +WKG GY V+Y A I+GID YYEAA +DGASK Sbjct: 159 LESLGLKEVNFYADLGIWPYLLLFLGIWKGFGYSSVMYYATIMGIDPTYYEAATVDGASK 218 Query: 228 WKQILHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTTLNSGALYPTTLVIDTYVYNAL 287 W++I + FR+DFGLFYQ N+G LY T V+D YV+N L Sbjct: 219 WQRIRNVTIPQLTPLVTVLTILAVGNIFRADFGLFYQIPHNAGQLYNVTNVLDVYVFNGL 278 Query: 288 INMGNLGMSAAAGLYQSIVGFFLVLGSNWIVRKVDKDQAVF 328 ++GM+AAAGLYQS+VG LV+ SN + R+VD + A+F Sbjct: 279 TQTADIGMAAAAGLYQSVVGLILVILSNLLARRVDPNSALF 319 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 149/277 (53%), Gaps = 7/277 (2%) Query: 50 INNYLPMFGIIIAFKNINYVDGILGSPWVGLDNFKFLFATSDAWIITRNTVLYNFVFIIL 109 I YLPM+G++IAFK+ + G S WVG D FK F D + + RNT++ + ++ Sbjct: 44 IFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLF 103 Query: 110 NLVIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKGILA 169 + +A+ LNE++ + + Q+ ++ P+F+S +V + F F V+ G INK I++ Sbjct: 104 AFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIMS 163 Query: 170 MFGLNELNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGASKWK 229 + G ++++ S+ ++ ++ + ++WK G+G +++LAA+ +D E YEAA++DGA +++ Sbjct: 164 LTG-EQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFR 222 Query: 230 QILHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTT--LNSGALYPTTLVIDTYVYNAL 287 ++ H F Y T LN + DTYVY Sbjct: 223 RMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSV----ADIFDTYVYMMG 278 Query: 288 INMGNLGMSAAAGLYQSIVGFFLVLGSNWIVRKVDKD 324 I G S A GL++S+VG L+ G+N+I +K D++ Sbjct: 279 ITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQE 315 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 145/277 (52%), Gaps = 3/277 (1%) Query: 50 INNYLPMFGIIIAFKNINYVDGILGSPWVGLDNFKFLFATSDAWIITRNTVLYNFVFIIL 109 I Y+P++G IAF++ I W G +F FLF + + RNT+ + + ++L Sbjct: 61 IFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLVL 120 Query: 110 NLVIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKGILA 169 V A+ +AI LNEL+N + Q++ + P+FLS VV + LV A L++E G IN ++ Sbjct: 121 GFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLMK 180 Query: 170 MFGLNE-LNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGASKW 228 + ++E + W +Y+ I+ ++WK VG+ +IYLAAI ID+E YEAA IDGA++ Sbjct: 181 LGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYEAAEIDGATRL 240 Query: 229 KQILHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTTLNSGALYPTTLVIDTYVYNALI 288 ++I + S F Y + L D +V I Sbjct: 241 QRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPMNMDFAENL--DIFVLRYGI 298 Query: 289 NMGNLGMSAAAGLYQSIVGFFLVLGSNWIVRKVDKDQ 325 NMGN ++ AAG+++++V F + +N I +++ + + Sbjct: 299 NMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEAR 335 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 141/263 (53%), Gaps = 3/263 (1%) Query: 50 INNYLPMFGIIIAFKNINYVDGILGSPWVGLDNFKFLFATSDAWIITRNTVLYNFVFIIL 109 I Y PMFGI++AF++ G GS WVGL +F +F A + NT++ + + +I Sbjct: 43 IFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIF 102 Query: 110 NLVIAVSIAIALNELKNKLAAKFYQSVMFFPYFLSMVVVSYLVFAFLNVEYGFINKGILA 169 L++ + +A+ LNE+ + + Q++++ PYFLS V++ ++ L+ + G +N+ L Sbjct: 103 GLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQA-LG 161 Query: 170 MFGLNELNWYSEPKYWPFILPLINLWKGVGYGCVIYLAAIIGIDSEYYEAALIDGASKWK 229 +FG++ + + ++ + + +LWK G+ +++LAAI ++ YEAA++DGA++WK Sbjct: 162 LFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWK 221 Query: 230 QILHXXXXXXXXXXXXXXXXXXXXXFRSDFGLFYQTTLNSGALYPTTLVIDTYVYNALIN 289 Q LH + F + L + +Y T +IDTYVY + Sbjct: 222 QTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFN--LYNPLVYQTGDIIDTYVYRVSLV 279 Query: 290 MGNLGMSAAAGLYQSIVGFFLVL 312 G+ A GL++S++ L++ Sbjct: 280 NGDFSYGTAVGLFKSLISLVLII 302 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.144 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,100,780 Number of extensions: 753509 Number of successful extensions: 2311 Number of sequences better than 1.0e-05: 126 Number of HSP's gapped: 2212 Number of HSP's successfully gapped: 126 Length of query: 328 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 221 Effective length of database: 26,037,693 Effective search space: 5754330153 Effective search space used: 5754330153 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)