BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0011.p (314 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZnikB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transp... 212 7e-55 nikB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transpo... 212 7e-55 ZnikB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transp... 211 1e-54 ECs4344 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 211 1e-54 BH0568 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 209 5e-54 >ZnikB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 671 Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 21/307 (6%), Positives = 45/307 (14%) Query: 6 ILRYLVQRLLQIIPVLFGISIITFALMQITPGDPAEIMLRADGIKPTLEAIQATRHALGL 65 + Q + + P + ++R T T + Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ 60 Query: 66 DGPIHMQFVHWLYRVFHLDLGISYSSGLPVREELMSRFPATALLSGCSLLTAMLIALPLG 125 R L + R + L L Sbjct: 61 RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLA 120 Query: 126 IGSALYPGSLLDRLGRACALFSVSVPXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPA 185 + G L+ R + + + G + Sbjct: 121 VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG 180 Query: 186 CTLGFGMAGIYIRLIRSSLLEVLGKLYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXX 245 A + ++ + + + + Sbjct: 181 FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL 240 Query: 246 XXXXXXXXSVIVESIFSWPGIGKYAVEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHL 305 + S V A + K L Sbjct: 241 GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL 300 Query: 306 LLNPRIR 312 R Sbjct: 301 GFVARAP 307 >nikB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 671 Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 21/307 (6%), Positives = 45/307 (14%) Query: 6 ILRYLVQRLLQIIPVLFGISIITFALMQITPGDPAEIMLRADGIKPTLEAIQATRHALGL 65 + Q + + P + ++R T T + Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ 60 Query: 66 DGPIHMQFVHWLYRVFHLDLGISYSSGLPVREELMSRFPATALLSGCSLLTAMLIALPLG 125 R L + R + L L Sbjct: 61 RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLA 120 Query: 126 IGSALYPGSLLDRLGRACALFSVSVPXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPA 185 + G L+ R + + + G + Sbjct: 121 VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG 180 Query: 186 CTLGFGMAGIYIRLIRSSLLEVLGKLYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXX 245 A + ++ + + + + Sbjct: 181 FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL 240 Query: 246 XXXXXXXXSVIVESIFSWPGIGKYAVEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHL 305 + S V A + K L Sbjct: 241 GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL 300 Query: 306 LLNPRIR 312 R Sbjct: 301 GFVARAP 307 Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 21/307 (6%), Positives = 45/307 (14%) Query: 6 ILRYLVQRLLQIIPVLFGISIITFALMQITPGDPAEIMLRADGIKPTLEAIQATRHALGL 65 + Q + + P + ++R T T + Sbjct: 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ 60 Query: 66 DGPIHMQFVHWLYRVFHLDLGISYSSGLPVREELMSRFPATALLSGCSLLTAMLIALPLG 125 R L + R + L L Sbjct: 61 RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLA 120 Query: 126 IGSALYPGSLLDRLGRACALFSVSVPXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPA 185 + G L+ R + + + G + Sbjct: 121 VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG 180 Query: 186 CTLGFGMAGIYIRLIRSSLLEVLGKLYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXX 245 A + ++ + + + + Sbjct: 181 FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL 240 Query: 246 XXXXXXXXSVIVESIFSWPGIGKYAVEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHL 305 + S V A + K L Sbjct: 241 GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL 300 Query: 306 LLNPRIR 312 R Sbjct: 301 GFVARAP 307 >ECs4344 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 314 Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 176/307 (57%) Query: 6 ILRYLVQRLLQIIPVLFGISIITFALMQITPGDPAEIMLRADGIKPTLEAIQATRHALGL 65 +LRY+++R L +IP++ S+I F ++++ GDPA LR + PT E + +TR LGL Sbjct: 1 MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGL 60 Query: 66 DGPIHMQFVHWLYRVFHLDLGISYSSGLPVREELMSRFPATALLSGCSLLTAMLIALPLG 125 D P+++Q+ WL++ HLD GIS+++ PV +++++ PAT L+G +L+ +L ++PLG Sbjct: 61 DQPLYVQYGTWLWKALHLDFGISFATQRPVLDDMLNFLPATLELAGAALVLILLTSVPLG 120 Query: 126 IGSALYPGSLLDRLGRACALFSVSVPXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPA 185 I +A + L D R A VS+P +V L+W P MG GW ++LPA Sbjct: 121 IWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPA 180 Query: 186 CTLGFGMAGIYIRLIRSSLLEVLGKLYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXX 245 ++ F I RL+R+S+L+V G+ ++ AR +GL + + H LRNA LP Sbjct: 181 VSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGM 240 Query: 246 XXXXXXXXSVIVESIFSWPGIGKYAVEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHL 305 ++I+E+IF+WPG+G+YAV AIF +DY VIQ + + Sbjct: 241 HIGELIGGTMIIENIFTWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNA 300 Query: 306 LLNPRIR 312 L+PRIR Sbjct: 301 ALDPRIR 307 >BH0568 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 314 Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 166/309 (53%) Query: 6 ILRYLVQRLLQIIPVLFGISIITFALMQITPGDPAEIMLRADGIKPTLEAIQATRHALGL 65 ++ Y+ +R+ +IP++ I F ++++P DPAE L A I PT E + RH GL Sbjct: 1 MVSYIAKRIFAVIPIVLFAIFIMFVFIRLSPVDPAEAYLTAANIHPTEELLAEKRHEFGL 60 Query: 66 DGPIHMQFVHWLYRVFHLDLGISYSSGLPVREELMSRFPATALLSGCSLLTAMLIALPLG 125 D P+ +Q+V + +VF LD G SY + PV +E+ +R PAT L+ S+ A+LI++PLG Sbjct: 61 DQPMAVQYVQTIVKVFQLDFGHSYVTNQPVWDEVTARMPATLQLAVSSIFLAVLISIPLG 120 Query: 126 IGSALYPGSLLDRLGRACALFSVSVPXXXXXXXXXXXXAVKLKWFPVMGMEGWPSVVLPA 185 SA+Y SL+DR R + S+P +VKL FPV G W +VLP Sbjct: 121 FLSAIYKNSLIDRFSRLLSYLGASIPQFWLGYLLIFFFSVKLNLFPVEGRGSWAHLVLPT 180 Query: 186 CTLGFGMAGIYIRLIRSSLLEVLGKLYIKAARAKGLQEWKVIGGHALRNALLPSXXXXXX 245 TL + IY RL+R+S+LE + + Y+ AR +G++E ++ H L+ A+ P Sbjct: 181 VTLSLALIAIYTRLLRASVLEQMQESYVLYARTRGIKEKVIMVKHVLKLAISPVITGLGM 240 Query: 246 XXXXXXXXSVIVESIFSWPGIGKYAVEAIFAKDYTVIQGYXXXXXXXXXXXXXXXXXXHL 305 ++IVE +FSWPG G+Y V+AIF +D VIQ Y L Sbjct: 241 NVGKLLTGTIIVEQVFSWPGFGRYFVDAIFNRDIPVIQCYVLLAACLFIVCNLIVDLVQL 300 Query: 306 LLNPRIRMR 314 ++PRI + Sbjct: 301 AMDPRISSK 309 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.144 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,396,557 Number of extensions: 737210 Number of successful extensions: 4509 Number of sequences better than 1.0e-05: 180 Number of HSP's gapped: 4106 Number of HSP's successfully gapped: 210 Length of query: 314 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 208 Effective length of database: 26,153,027 Effective search space: 5439829616 Effective search space used: 5439829616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)