BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0010.p (268 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MA0880 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 266 2e-71 FN1522 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 244 8e-65 PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 239 2e-63 BH0569 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 237 2e-62 BH1798 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 224 1e-58 >MA0880 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 278 Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 127/260 (48%), Positives = 184/260 (70%), Gaps = 4/260 (1%) Query: 12 MIVFLFVCIGIFAPWLAPSDPLQIHMEHKLSMPSWEYPLGTDHLGRCVLSRLIYGTRTSL 71 MI FL +FAPW+AP DP++ ++ + P EYP+GTD LGRCVLSR+IYG R SL Sbjct: 18 MITFLLF-FAVFAPWIAPHDPVEPNLGKRFLSPCKEYPMGTDDLGRCVLSRVIYGARVSL 76 Query: 72 YYSLMVLAAVFSISIPVGLLAGYVGGIIDHLIMRVIDILLAFPSLILSLAVTAVLGPSMK 131 S+ V+ + I + +GL++GY GG +D LIMR +DI+LAFP +IL++AV LGP + Sbjct: 77 QVSMTVVGIITVIGVTLGLISGYFGGALDELIMRFVDIVLAFPGIILAMAVAGALGPGLF 136 Query: 132 NLLISFAAVWWAGYARVIRSMVLQIKESDYIMAAKAGGSTHLQIILRHILLNATRPILVL 191 N++++ A V W G+ARV+RS V+ +KE +++ +A+A G L I+ RHIL N P+LVL Sbjct: 137 NVMLALALVSWTGFARVVRSSVMAVKEKEFVESARALGCNDLYIMTRHILPNVITPVLVL 196 Query: 192 ASIEIGTLMLSIAGLSFLGLGAQPPTPEWGVMLNDSRPYIQTEPRLLLYPGLAIMLSVLG 251 A++++G ++L+ A LSFLGLGAQPP P+WG MLN+ R +++T P L ++PG+AI +V+ Sbjct: 197 ATLDMGFIILAAASLSFLGLGAQPPIPDWGSMLNNGRVFMRTAPFLTIFPGIAITTAVMA 256 Query: 252 FNLLGEGLR---KPGQKEEL 268 FN LG+GLR P + EL Sbjct: 257 FNFLGDGLRDALDPRPQREL 276 >FN1522 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 276 Score = 244 bits (624), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 123/246 (50%), Positives = 172/246 (69%) Query: 16 LFVCIGIFAPWLAPSDPLQIHMEHKLSMPSWEYPLGTDHLGRCVLSRLIYGTRTSLYYSL 75 + V I IFA +AP DPL M+ L P LGTD LGR +LSR+IYGTR SL+ +L Sbjct: 22 IIVLIAIFAKQIAPKDPLNAVMDKPLHSPDKVNLLGTDILGRDILSRIIYGTRYSLFMTL 81 Query: 76 MVLAAVFSISIPVGLLAGYVGGIIDHLIMRVIDILLAFPSLILSLAVTAVLGPSMKNLLI 135 +++ VF++ +GLLAGY GGI+D LIMR+ D++++FP +IL++A+ +LGPSM N +I Sbjct: 82 VLVGTVFTLGTILGLLAGYFGGIVDTLIMRLADMMVSFPGIILAIAIAGLLGPSMTNAII 141 Query: 136 SFAAVWWAGYARVIRSMVLQIKESDYIMAAKAGGSTHLQIILRHILLNATRPILVLASIE 195 + +AV W YAR+ RSMVL+IK+ Y+ AA+ GS I+ ++IL N +LV A + Sbjct: 142 AISAVTWPKYARLSRSMVLKIKKELYVEAARLTGSKDKDILFKYILPNMVTLMLVTAISD 201 Query: 196 IGTLMLSIAGLSFLGLGAQPPTPEWGVMLNDSRPYIQTEPRLLLYPGLAIMLSVLGFNLL 255 IG LML I+ LSFLG GAQPP PEWG MLN+ R Y+ P L+LYPG+AI++ V+ FN+L Sbjct: 202 IGALMLEISALSFLGFGAQPPIPEWGAMLNEGRTYLAKAPWLMLYPGMAIVIVVVVFNML 261 Query: 256 GEGLRK 261 G+ ++ Sbjct: 262 GDNIKD 267 >PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 287 Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 122/269 (45%), Positives = 183/269 (68%), Gaps = 3/269 (1%) Query: 2 FKSN--GAKAGGMIVFLFVCIGIFAPWLAPSDPLQIHMEHKLSMPSWEYPLGTDHLGRCV 59 FK N G G+I+F +V + IFAP++AP P++ H+E +L P +Y GTD GR + Sbjct: 19 FKKNKLGMIGLGIIIF-WVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTDEFGRDI 77 Query: 60 LSRLIYGTRTSLYYSLMVLAAVFSISIPVGLLAGYVGGIIDHLIMRVIDILLAFPSLILS 119 SR++YG+R +L ++V +I + +GL++GY GG +D +IMR +DI+ AFP+LIL+ Sbjct: 78 FSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAFPALILA 137 Query: 120 LAVTAVLGPSMKNLLISFAAVWWAGYARVIRSMVLQIKESDYIMAAKAGGSTHLQIILRH 179 LA+ A+LGP + N +I+ A V WA YARV+R+ L +KE +I AA+A G + L+I+ + Sbjct: 138 LAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSY 197 Query: 180 ILLNATRPILVLASIEIGTLMLSIAGLSFLGLGAQPPTPEWGVMLNDSRPYIQTEPRLLL 239 IL N ILVL + I + +++ + LSFLGLGAQPP+P+WG+ML+ +R Y+ P + Sbjct: 198 ILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSI 257 Query: 240 YPGLAIMLSVLGFNLLGEGLRKPGQKEEL 268 +PGLAIM VLGFN +G+GLR Q E++ Sbjct: 258 FPGLAIMTLVLGFNFVGDGLRDAIQPEKV 286 >BH0569 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 277 Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 115/248 (46%), Positives = 177/248 (71%) Query: 12 MIVFLFVCIGIFAPWLAPSDPLQIHMEHKLSMPSWEYPLGTDHLGRCVLSRLIYGTRTSL 71 +I+F+F + I APW+AP DP+Q+++ KL PSWEYPLGTD LGRC LSRL++G R SL Sbjct: 20 VILFVFFLLAILAPWIAPHDPIQVNLALKLLPPSWEYPLGTDQLGRCNLSRLLFGARVSL 79 Query: 72 YYSLMVLAAVFSISIPVGLLAGYVGGIIDHLIMRVIDILLAFPSLILSLAVTAVLGPSMK 131 ++ ++ + I + VG +AGY GG ID ++MR + ++AFP+L+L L + + GP + Sbjct: 80 GFATLIFISSLGIGLLVGAIAGYRGGWIDSVLMRFCEGVMAFPNLVLVLGLVGLFGPGLW 139 Query: 132 NLLISFAAVWWAGYARVIRSMVLQIKESDYIMAAKAGGSTHLQIILRHILLNATRPILVL 191 ++++ V W YAR+ RSM++ +KE ++I AA+ GS+ +II RHI+ N PI+V+ Sbjct: 140 QVVLALVMVQWVYYARMFRSMIVSLKEQNFITAARISGSSPWKIIRRHIIPNVLPPIVVI 199 Query: 192 ASIEIGTLMLSIAGLSFLGLGAQPPTPEWGVMLNDSRPYIQTEPRLLLYPGLAIMLSVLG 251 ++E+G ++ I+ LSFLGLG QPPTPEWG M+++ + +I++ P L+LYPG+ I+L V+ Sbjct: 200 GTLEMGWAIMDISALSFLGLGIQPPTPEWGAMIHEGKSFIRSHPELMLYPGIMILLVVMT 259 Query: 252 FNLLGEGL 259 FN+LGE L Sbjct: 260 FNVLGESL 267 >BH1798 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 283 Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 115/265 (43%), Positives = 173/265 (65%), Gaps = 10/265 (3%) Query: 3 KSNGAKAGGMIVFLFVCI------GIFAPWLAPSDPLQIHMEHKLSMPSWEYPLGTDHLG 56 K N +A + F+C+ ++A DP +M +L S ++PLGTDHLG Sbjct: 13 KKNSWRA----IIAFICLVVVAVSALYAFLYLRHDPTLANMGERLQGMSLQHPLGTDHLG 68 Query: 57 RCVLSRLIYGTRTSLYYSLMVLAAVFSISIPVGLLAGYVGGIIDHLIMRVIDILLAFPSL 116 R VL+RL+ G + ++ YSLM L I IP GL++GY GGI+D + MRV D LAFP Sbjct: 69 RDVLTRLLLGAQQTVGYSLMALLVALFIGIPFGLISGYKGGIVDRVFMRVADGFLAFPDT 128 Query: 117 ILSLAVTAVLGPSMKNLLISFAAVWWAGYARVIRSMVLQIKESDYIMAAKAGGSTHLQII 176 I+++ ++ +LGP + NL+++ V W YAR++RS VL E DY+ A+ G + +I+ Sbjct: 129 IVAIVLSGLLGPGIGNLVLAIVMVKWVSYARLVRSTVLTEVEKDYVAIARINGLSSSKIM 188 Query: 177 LRHILLNATRPILVLASIEIGTLMLSIAGLSFLGLGAQPPTPEWGVMLNDSRPYIQTEPR 236 +H+ + +LV+A++++G ++L I+ LS++GLGAQPPTPEWG MLNDSRPY Q+ P+ Sbjct: 189 RKHLFPHIVGHVLVMATLDLGKIILLISALSYIGLGAQPPTPEWGAMLNDSRPYFQSMPQ 248 Query: 237 LLLYPGLAIMLSVLGFNLLGEGLRK 261 L++YPGLAI++ VL N+LG+ LR Sbjct: 249 LMIYPGLAIVIVVLLTNMLGDYLRD 273 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.143 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,489,577 Number of extensions: 726249 Number of successful extensions: 2857 Number of sequences better than 1.0e-05: 201 Number of HSP's gapped: 2697 Number of HSP's successfully gapped: 203 Length of query: 268 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 163 Effective length of database: 26,268,361 Effective search space: 4281742843 Effective search space used: 4281742843 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)