BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0009.p (261 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0350 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 266 3e-71 STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibi... 261 6e-70 TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 261 6e-70 CAC0179 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 258 8e-69 CAC3182 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 255 5e-68 >BH0350 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 329 Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 128/254 (50%), Positives = 184/254 (72%) Query: 7 LLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPGR 66 LL +R L+T F T+ AV +V+ VS EV+ + VA+VGESGCGKSVT++S++GL+ PG+ Sbjct: 6 LLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGK 65 Query: 67 VEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKKV 126 + G++ G +L S+RE RKLR E+++IFQ+P+ +L+PL IG Q+ E ++ H++V Sbjct: 66 IVGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEVILQHQQV 125 Query: 127 SRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPTT 186 +++EAK +E +++ G+ E +Y YP Q+SGGM QRVMIA+AL +LLIADEPTT Sbjct: 126 TKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIADEPTT 185 Query: 187 ALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTLF 246 ALDV QA+IL+ + ++ ILLITHD GVVAE+AD V VM +G++VE +V+TLF Sbjct: 186 ALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQADVFTLF 245 Query: 247 ANPVHPYTRQLLSS 260 A P HPYT+ LL+S Sbjct: 246 ATPAHPYTQGLLAS 259 >STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs Length = 305 Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 19/251 (7%), Positives = 50/251 (19%) Query: 10 IRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPGRVEK 69 + L + + + V G V+ +D GR Sbjct: 1 MLILIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKIN 60 Query: 70 GEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKKVSRK 129 + +E ++ + + I + + + + + Sbjct: 61 MMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVL 120 Query: 130 EAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPTTALD 189 + L +R ++ L G R+ I + + A Sbjct: 121 GSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAER 180 Query: 190 VMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTLFANP 249 + E R + E ++ + Sbjct: 181 TKRAYILEAEGVRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATQMVS 240 Query: 250 VHPYTRQLLSS 260 + + Sbjct: 241 EAIAAGDIQAI 251 >TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 327 Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 131/251 (52%), Positives = 180/251 (71%) Query: 10 IRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPGRVEK 69 + +L+T F T+D V AVD VS EVR + + +VGESG GKSVT++S++ LLD G++ Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVD 60 Query: 70 GEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKKVSRK 129 G++ G NL E S+ E+RK+R KEIA+IFQ+PM AL+P+ IG QI E ++LH+ VS K Sbjct: 61 GKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSEK 120 Query: 130 EAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPTTALD 189 EA+ +A++ +R+ G+ +PE +YP Q+SGGM QR MIA+AL LLIADEPTTALD Sbjct: 121 EARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALD 180 Query: 190 VMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTLFANP 249 V QA+IL+ + ++ G+ I+LITHD GVVAE++D V VM +GK+VE G+V T+F P Sbjct: 181 VTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEP 240 Query: 250 VHPYTRQLLSS 260 HPYT LL S Sbjct: 241 KHPYTYALLES 251 >CAC0179 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 325 Score = 258 bits (658), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 125/261 (47%), Positives = 189/261 (72%), Gaps = 2/261 (0%) Query: 2 LTETPLLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLL 61 ++ET LL++++L+T F T++ V AVDDVS E++ ++ +A+VGESGCGKS+TAMS++ L+ Sbjct: 1 MSET-LLQVKNLKTYFHTEEGTVKAVDDVSFEIKEKETLAIVGESGCGKSITAMSIMRLI 59 Query: 62 -DPPGRVEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETV 120 +PPG++E GE+ G +L + + ++R++R +I++IFQ+PM +L+P+ +G+QI E + Sbjct: 60 PNPPGKIEGGEILFDGKDLIKMRQSDIREIRGNKISLIFQEPMTSLNPVFTVGEQIEEAL 119 Query: 121 MLHKKVSRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLI 180 +LHKK+ +K+AK A++ + + E +Y YP ++SGGM QRV+IA+A+ RLLI Sbjct: 120 ILHKKMDKKQAKREAIKMLTMVRIPRAEEIYKAYPHELSGGMRQRVVIAMAISCSPRLLI 179 Query: 181 ADEPTTALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAG 240 ADEPTTALDV QA+IL + ++ I+LITHD G+VAE+ADYV VM +GKIVE Sbjct: 180 ADEPTTALDVTIQAQILDIMRELKEKVNTSIILITHDLGIVAEMADYVVVMYAGKIVEKA 239 Query: 241 NVYTLFANPVHPYTRQLLSSR 261 V L+ NP HPYT LL S+ Sbjct: 240 PVIELYKNPKHPYTVGLLKSK 260 >CAC3182 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 324 Score = 255 bits (651), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 125/255 (49%), Positives = 177/255 (69%) Query: 7 LLRIRHLRTSFCTKDQAVTAVDDVSMEVRPRQIVALVGESGCGKSVTAMSVLGLLDPPGR 66 LL+I +L+T F + AVD++S V+ + V +VGESGCGKSVT++S++GL++ PGR Sbjct: 5 LLKISNLKTYFYIDNDIRKAVDNISFSVKKGETVCIVGESGCGKSVTSLSIMGLINEPGR 64 Query: 67 VEKGEVWLGGNNLREYSKRELRKLRSKEIAIIFQDPMNALHPLLPIGKQIRETVMLHKKV 126 + GE+ N+L + SK +L+KLR KEI++IFQ+PM +L+P+ IG QI E ++ H+ + Sbjct: 65 IINGEILYKNNDLLKLSKSDLQKLRGKEISMIFQEPMTSLNPVFTIGHQITEILLEHELI 124 Query: 127 SRKEAKALALEQMRRAGLSDPELLYTKYPFQISGGMCQRVMIAIALISGARLLIADEPTT 186 ++ EA A+ + GL E + YP ++SGGM QR++IA+AL S +LLIADEPTT Sbjct: 125 NKDEAYKKAIRLINSVGLPRAEEIMKSYPHKLSGGMLQRIIIAMALSSNPKLLIADEPTT 184 Query: 187 ALDVMAQARILKELDRIRHAEGLGILLITHDFGVVAELADYVYVMQSGKIVEAGNVYTLF 246 ALDV QA+IL L +++ IL ITHD GVVAE+ADYV VM +GKI+E V LF Sbjct: 185 ALDVTIQAQILDLLKKLKSTLNTSILFITHDLGVVAEIADYVIVMYAGKIIEEAPVIELF 244 Query: 247 ANPVHPYTRQLLSSR 261 NP HPYT+ LL+S+ Sbjct: 245 KNPKHPYTQGLLNSK 259 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,465,400 Number of extensions: 736494 Number of successful extensions: 9048 Number of sequences better than 1.0e-05: 1877 Number of HSP's gapped: 6934 Number of HSP's successfully gapped: 2021 Length of query: 261 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 157 Effective length of database: 26,383,695 Effective search space: 4142240115 Effective search space used: 4142240115 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)