BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0204.0002.p
         (262 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yvfV [C] COG0247 Fe-S oxidoreductase                               323   2e-88
BH1832 [C] COG0247 Fe-S oxidoreductase                                322   4e-88
ZykgE [C] COG0247 Fe-S oxidoreductase                                 232   5e-61
ykgE [C] COG0247 Fe-S oxidoreductase                                  232   5e-61
PM1853 [C] COG0247 Fe-S oxidoreductase                                231   8e-61

>BS_yvfV [C] COG0247 Fe-S oxidoreductase
          Length = 346

 Score =  323 bits (827), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 10/236 (4%), Positives = 35/236 (14%)

Query: 10  MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69
           M+        +++    +G                    V  G    +   +       +
Sbjct: 1   MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 70  NMMRAFEHSDYVVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLGI 129
                  +    +   GS   +              +              + +   L  
Sbjct: 61  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120

Query: 130 TDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSVK 189
                       + +                         ++ L                
Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180

Query: 190 MPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVLN 245
                                  + +       +    L+   +   +  +A    
Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236


>BH1832 [C] COG0247 Fe-S oxidoreductase
          Length = 346

 Score =  322 bits (825), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 10/244 (4%), Positives = 36/244 (14%)

Query: 10  MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69
           M+        +++    +G                    V  G    +   +       +
Sbjct: 1   MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 70  NMMRAFEHSDYVVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLGI 129
                  +    +   GS   +              +              + +   L  
Sbjct: 61  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120

Query: 130 TDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSVK 189
                       + +                         ++ L                
Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180

Query: 190 MPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVLNHHNP 249
                                  + +       +    L+   +   +  +A        
Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT 240

Query: 250 TKKE 253
              +
Sbjct: 241 LTGK 244


>ZykgE [C] COG0247 Fe-S oxidoreductase
          Length = 346

 Score =  232 bits (591), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 13/236 (5%), Positives = 41/236 (17%), Gaps = 1/236 (0%)

Query: 10  MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69
           M+        +++    +G                    V  G    +   +       +
Sbjct: 1   MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 70  NMMRAFE-HSDYVVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLG 128
                     +++         +          +    ++     ++          +  
Sbjct: 61  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120

Query: 129 ITDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSV 188
           +      L       R  +    LG   T       +        +            S 
Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180

Query: 189 KMPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVL 244
           +      + ++            I     +       G           +     L
Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236


>ykgE [C] COG0247 Fe-S oxidoreductase
          Length = 346

 Score =  232 bits (591), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 13/236 (5%), Positives = 41/236 (17%), Gaps = 1/236 (0%)

Query: 10  MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69
           M+        +++    +G                    V  G    +   +       +
Sbjct: 1   MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 70  NMMRAFE-HSDYVVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLG 128
                     +++         +          +    ++     ++          +  
Sbjct: 61  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120

Query: 129 ITDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSV 188
           +      L       R  +    LG   T       +        +            S 
Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180

Query: 189 KMPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVL 244
           +      + ++            I     +       G           +     L
Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236


>PM1853 [C] COG0247 Fe-S oxidoreductase
          Length = 346

 Score =  231 bits (589), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 13/236 (5%), Positives = 40/236 (16%), Gaps = 1/236 (0%)

Query: 10  MKVSIFSTCVVDLMAPNVGIAMVQVLERLGCEIDFPASQVCCGQPTYNSGYLEDSKLAMK 69
           M+        +++    +G                    V  G    +   +       +
Sbjct: 1   MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60

Query: 70  NMMRAFEHSDY-VVGPSGSCIAMFHEYPKIFKGDPQWELKAVALKEKAYEFTQFIVRVLG 128
                  +    +         +          +    ++     ++          +  
Sbjct: 61  TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120

Query: 129 ITDVGASLEGTATYHRSCHMTRLLGERETPFQLLEQVQGLQMEPLKNSDNCCGFGGTFSV 188
           +      L       R  +    LG   T       +        +            S 
Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180

Query: 189 KMPDISEQMVNEKCGCITETGADILISADMGCLLNIGGRLSRKGEPVKIMHIAEVL 244
           +      + ++            I     +       G           +     L
Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,028,594
Number of extensions: 731736
Number of successful extensions: 1112
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 1073
Number of HSP's successfully gapped: 45
Length of query: 262
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 158
Effective length of database: 26,383,695
Effective search space: 4168623810
Effective search space used: 4168623810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)